Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq

BMC Genomics

Table 3 Peaks obtained from MeDIP-Seq data combined across replicates and their distribution in switchgrass genome

	AP13		VS16		Chr length (Mb)	AP13		VS16
Chr	Total peaks	Annotated	Total peaks	Annotated	Chr length (Mb)	Total peaks/Mb	Annotated peaks/Mb	Total peaks/Mb	Annotated peaks/Mb
1a	9383	1298	6610	953	97.81	95.93	13.27	67.58	9.74
1b	8176	1230	5673	907	80.38	101.71	15.30	70.57	11.28
2a	10,727	1502	7608	1165	103.95	103.20	14.45	73.19	11.21
2b	9030	1296	6631	1035	93.55	96.52	13.85	70.88	11.06
3a	7695	1339	5610	1004	73.00	105.41	18.34	76.85	13.75
3b	5355	729	3697	533	57.82	92.62	12.61	63.94	9.22
4a	6214	949	4312	686	63.56	97.76	14.93	67.84	10.79
4b	5599	820	3813	584	56.30	99.44	14.56	67.72	10.37
5a	11,457	1836	8246	1406	116.48	98.36	15.76	70.79	12.07
5b	10,597	1575	7576	1200	100.40	105.55	15.69	75.46	11.95
6a	6429	957	4663	744	72.90	88.19	13.13	63.97	10.21
6b	7013	801	5118	626	80.13	87.53	10.00	63.87	7.81
7a	6179	953	4392	731	75.76	81.56	12.58	57.97	9.65
7b	6646	978	4721	738	70.77	93.91	13.82	66.71	10.40
8a	5524	720	3774	520	73.87	74.78	9.75	51.09	7.04
8b	5968	733	3762	517	77.82	76.69	9.42	48.34	6.64
9a	12,929	1845	9148	1397	122.78	105.30	15.03	74.51	11.38
9b	9541	1460	7322	1189	87.97	108.46	16.60	83.23	13.52

ISSN: 1471-2164