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Table 3 Peaks obtained from MeDIP-Seq data combined across replicates and their distribution in switchgrass genome

From: Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq

  AP13 VS16 Chr length (Mb) AP13 VS16
Chr Total peaks Annotated Total peaks Annotated Total peaks/Mb Annotated peaks/Mb Total peaks/Mb Annotated peaks/Mb
1a 9383 1298 6610 953 97.81 95.93 13.27 67.58 9.74
1b 8176 1230 5673 907 80.38 101.71 15.30 70.57 11.28
2a 10,727 1502 7608 1165 103.95 103.20 14.45 73.19 11.21
2b 9030 1296 6631 1035 93.55 96.52 13.85 70.88 11.06
3a 7695 1339 5610 1004 73.00 105.41 18.34 76.85 13.75
3b 5355 729 3697 533 57.82 92.62 12.61 63.94 9.22
4a 6214 949 4312 686 63.56 97.76 14.93 67.84 10.79
4b 5599 820 3813 584 56.30 99.44 14.56 67.72 10.37
5a 11,457 1836 8246 1406 116.48 98.36 15.76 70.79 12.07
5b 10,597 1575 7576 1200 100.40 105.55 15.69 75.46 11.95
6a 6429 957 4663 744 72.90 88.19 13.13 63.97 10.21
6b 7013 801 5118 626 80.13 87.53 10.00 63.87 7.81
7a 6179 953 4392 731 75.76 81.56 12.58 57.97 9.65
7b 6646 978 4721 738 70.77 93.91 13.82 66.71 10.40
8a 5524 720 3774 520 73.87 74.78 9.75 51.09 7.04
8b 5968 733 3762 517 77.82 76.69 9.42 48.34 6.64
9a 12,929 1845 9148 1397 122.78 105.30 15.03 74.51 11.38
9b 9541 1460 7322 1189 87.97 108.46 16.60 83.23 13.52