Skip to main content

Table 2 QTL identified with significant association to ferrous iron toxicity tolerance related traits

From: QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Traita QTL Chr Interval (Mb) Control Fe stress Ratio of stress to control Previously reported QTL or gene
P valueb Effectc R 2(%)d P value Effect R 2(%) P value Effect R 2(%)
SH qSh1 1 38.11–38.54 4.62E-06 −3.1 5.9        
  qSh2 2 24.35–24.56 3.07E-05 3.0 4.8 9.03E-05 2.2 6.1 3.79E-05 −0.04 7.3  
  qSh6 6 10.17–10.38 5.69E-06 3.1 8.3 1.38E-06 3.3 9.5     Qsh6a [22]
  qSh12 12 19.73–19.81 6.63E-05 3.2 4.4 3.49E-05 2.0 6.9     
RL qRl2 2 11.17–11.19 4.59E-05 −0.7 8.3     1.51E-05 0.07 9.5  
  qRl3 3 23.50–23.68 1.56E-05 1.3 9.4 8.16E-05 −0.8 7.8     
SFW qSfw2 2 25.87–25.97     5.32E-06 −30.1 9.7 4.21E-06 −0.05 10.2  
  qSfw3a 3 26.68–26.79 7.39E-06 66.1 7.0 2.82E-05 42.1 5.5     
  qSfw5b 5 14.23–14.33     1.83E-05 58.3 8.6     
  qSfw6 6 10.03–10.38     1.10E-05 40.5 9.0     
  qSfw11 11 23.03–23.42 8.06E-05 47.0 7.4 5.41E-07 53.5 11.9     
SDW qSdw3a 3 26.68–26.79 3.16E-06 13.6 8.3 4.49E-06 12.7 9.3     OsIRT1 [34]
  qSdw3b 3 35.01–35.29 2.60E-05 11.2 5.9 3.80E-06 13.6 8.8     qSdw3 [10]
  qSdw6 6 10.12–10.38     1.03E-05 5.4 9.2 6.35E-05 0.06 7.9 qSdw [24]
  qSdw11 11 23.03–23.19 5.35E-06 7.1 10.3 1.51E-06 6.8 11.0     qLBI11 [10]
  qSdw12 12 0.48–0.49 5.82E-05 7.3 7.9 5.24E-06 7.5 9.8     
RDW qRdw3 3 15.60–15.70 1.04E-05 −0.7 8.5 4.18E-05 −0.9 7.8     qFRRDW3 [25]
  qRdw5b 5 14.24–14.33     3.05E-05 1.1 8.0     
  qRdw6 6 10.03–10.38     1.78E-05 1.0 8.5     
  qRdw8 8 25.15–25.22 3.91E-06 1.0 9.4        
  qRdw9 9 14.56–14.84 2.97E-06 1.1 9.7 2.19E-05 1.2 8.4     qFRRDW9–2 [25]
  qRdw11 11 23.00–23.18 6.87E-05 0.8 6.9 6.62E-06 1.2 9.5     
  qRdw12 12 0.42–0.48     1.19E-05 1.3 8.9     
SWC qSwc2 2 24.17–24.41     2.38E-05 −0.8 8.4 2.79E-05 −0.01 8.6  
  qSwc11 11 ~23.95     1.14E-07 −1.5 13.5 2.88E-06 −0.02 10.9 qSWC [13]
  qSwc12 12 17.94–17.99 2.63E-05 −1.4 9.0        
SFe qSFe2 2 29.81–29.93     7.43E-06 1.7 9.4     
  qSFe5 5 11.18–11.19     5.66E-05 2.3 7.5     
  qSFe6 6 ~10.38     2.62E-05 1.8 8.2     
  1. aSame as in Fig. 1
  2. bthe peak value in the chromosome region
  3. cAllele effect with respect to the minor allele
  4. dPhenotypic variance explained