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Table 3 QTL identified with significant association to zinc toxicity tolerance related traits

From: QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study

Trait QTL Chr Interval (Mb) Control Zn stress Ratio of stress to control Previously reported
P valuea Effectb R 2(%)c P value Effect R 2(%) P value Effect R 2(%) QTL
SH qSh1 1 37.93–38.54 2.85E-06 −3.4 3.7 6.39E-06 −1.8 4.7     
  qSh4a 4 0.87–0.89     4.24E-05 1.7 3.8 2.06E-05 0.03 9.0  
  qSh4b 4 16.38–16.87 5.42E-05 3.0 2.7 1.70E-05 2.3 4.2     
  qSh7 7 6.19–6.27 1.00E-05 2.6 3.3        
  qSh10 10 11.54–11.55     3.22E-05 2.2 3.9     
RL qRl2 2 11.10–11.11     1.99E-05 −0.6 8.0 9.73E-05 −0.05 6.9  
  qRl4 4 5.10–5.11 3.69E-05 0.4 6.8        
  qRl8 8 24.66–24.77     6.27E-05 −0.9 7.0 1.31E-05 −0.07 8.7  
SFW qSfw3a 3 26.69–26.84 3.17E-06 87.7 6.7 3.91E-06 51.1 8.2     
  qSfw3b 3 35.03–35.16 1.15E-06 95.9 7.3 1.70E-06 61.1 8.8     qZNT-3 [11]
  qSfw4 4 16.41–16.58     8.09E-07 47.1 9.4     
  qSfw5a 5 1.76–1.86     7.04E-05 −31.2 6.0 2.63E-05 −0.07 7.9  
  qSfw10 10 13.05–13.09     3.85E-05 24.6 6.4 2.05E-05 0.06 8.1  
  qSfw12 12 0.46–0.48     9.63E-07 64.9 9.3     
SDW qSdw1 1 22.54–22.59 8.77E-06 8.7 6.4 3.80E-05 8.2 6.3     
  qSdw3a 3 26.69–26.84 6.20E-05 9.9 5.2 1.85E-06 8.3 4.4     
  qSdw3b 3 35.01–35.22 3.12E-05 9.0 5.6 1.47E-06 8.6 10.5     qZNT-3 [11]
  qSdw4 4 16.46–16.58     4.13E-05 5.5 6.2     
  qSdw5 5 7.24–7.55     1.04E-06 6.9 9.0     
  qSdw7 7 28.83–28.87 9.88E-06 −7.7 6.3        
  qSdw8 8 19.65–19.68     2.55E-05 4.1 6.6     
  qSdw12 12 0.47–0.48 5.52E-05 8.6 5.2 5.11E-06 8.6 7.8     
RDW qRdw2 2 31.59–31.63     4.77E-06 0.8 9.8     
  qRdw5a 5 11.07–11.19 1.40E-05 −1.3 8.7 2.80E-05 −1.2 8.1     
  qRdw6 6 ~10.38     1.68E-05 −0.9 8.6 3.67E-05 −0.06 8.4  
  qRdw12 12 0.46–0.48     9.22E-05 −0.8 7.1 2.50E-05 −0.05 8.8  
SWC qSwc5 5 1.83–2.03     8.47E-06 −1.02 9.4 3.15E-05 −0.01 7.3  
  qSwc9 9 10.81–11.19     2.65E-06 0.64 10.5 1.67E-06 0.01 8.6  
  qSwc10 10 13.05–13.12     2.31E-05 0.58 8.4 6.68E-05 0.01 6.7  
SZn qSZn5 5 11.18–11.19     1.57E-06 0.72 11.8     
  qSZn11 11 17.63–17.83     4.10E-05 −0.48 8.5     
  1. aSame as in Fig. 1
  2. bthe peak value in the chromosome region
  3. cAllele effect with respect to the minor allele
  4. dPhenotypic variance explained