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Table 1 Small RNA categorization in sugarcane

From: miRNA alteration is an important mechanism in sugarcane response to low-temperature environment

Categorization

Unique sRNA (%)

Total sRNA (%)

F0 (%)

F3 (%)

R0 (%)

R3 (%)

F0 (%)

F3 (%)

R0 (%)

R3 (%)

miRNA

67,373 (0.53)

57,249 (0.56)

59,960 (0.54)

58,772 (0.58)

2,386,352 (9.41)

1,638,016 (7.89)

2,635,873 (10.12)

2,302,177 (9.52)

rRNA

56,395 (0.44)

80,912 (0.79)

81,039 (0.73)

98,210 (0.97)

729,453 (2.88)

1,613,788 (7.78)

1,453,854 (5.58)

2,451,555 (10.14)

repeat

412 (0)

345 (0)

447 (0)

376 (0)

957 (0)

799 (0)

1019 (0)

774 (0)

snRNA

4811 (0.04)

4600 (0.05)

4096 (0.04)

4259 (0.04)

12,452 (0.05)

12,260 (0.06)

12,838 (0.05)

13,164 (0.05)

snoRNA

2152 (0.02)

2197 (0.02)

2584 (0.02)

2396 (0.02)

4567 (0.02)

4583 (0.02)

5840 (0.02)

5522 (0.02)

srpRNA

0 (0)

2 (0)

0 (0)

0 (0)

0 (0)

2 (0)

0 (0)

0 (0)

tRNA

9007 (0.07)

13,069 (0.13)

13,810 (0.12)

15,819 (0.16)

214,125 (0.84)

17,084,377 (1.94)

467,304 (1.79)

696,897 (2.88)

unann

12,602,337 (98.8)

10,044,731 (98.45)

10,917,735 (98.54)

9,907,437 (98.22)

22,010,746 (86.8)

17,084,337 (1.94)

21,461,967 (82.42)

18,702,763 (77.37)

Clean reads

12,742,487 (100)

10,203,105 (100)

11,079,671 (100)

10,087,269 (100)

25,358,652 (100)

20,755,724 (100)

26,038,695 (100)

24,172,852 (100)

Raw reads

–

–

–

–

25,556,975

20,959,989

26,243,698

24,392,550

  1. The number represents the raw data generated directly from small RNA deep sequencing. F0 and F3 represent the bud sample from sugarcane cultivar FN39 with 0 h and 3 h cold (4 °C) treatment, respectively, while R0 and R3 represent the similar samples from cultivar ROC22, respectively