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Table 1 Small RNA categorization in sugarcane

From: miRNA alteration is an important mechanism in sugarcane response to low-temperature environment

Categorization Unique sRNA (%) Total sRNA (%)
F0 (%) F3 (%) R0 (%) R3 (%) F0 (%) F3 (%) R0 (%) R3 (%)
miRNA 67,373 (0.53) 57,249 (0.56) 59,960 (0.54) 58,772 (0.58) 2,386,352 (9.41) 1,638,016 (7.89) 2,635,873 (10.12) 2,302,177 (9.52)
rRNA 56,395 (0.44) 80,912 (0.79) 81,039 (0.73) 98,210 (0.97) 729,453 (2.88) 1,613,788 (7.78) 1,453,854 (5.58) 2,451,555 (10.14)
repeat 412 (0) 345 (0) 447 (0) 376 (0) 957 (0) 799 (0) 1019 (0) 774 (0)
snRNA 4811 (0.04) 4600 (0.05) 4096 (0.04) 4259 (0.04) 12,452 (0.05) 12,260 (0.06) 12,838 (0.05) 13,164 (0.05)
snoRNA 2152 (0.02) 2197 (0.02) 2584 (0.02) 2396 (0.02) 4567 (0.02) 4583 (0.02) 5840 (0.02) 5522 (0.02)
srpRNA 0 (0) 2 (0) 0 (0) 0 (0) 0 (0) 2 (0) 0 (0) 0 (0)
tRNA 9007 (0.07) 13,069 (0.13) 13,810 (0.12) 15,819 (0.16) 214,125 (0.84) 17,084,377 (1.94) 467,304 (1.79) 696,897 (2.88)
unann 12,602,337 (98.8) 10,044,731 (98.45) 10,917,735 (98.54) 9,907,437 (98.22) 22,010,746 (86.8) 17,084,337 (1.94) 21,461,967 (82.42) 18,702,763 (77.37)
Clean reads 12,742,487 (100) 10,203,105 (100) 11,079,671 (100) 10,087,269 (100) 25,358,652 (100) 20,755,724 (100) 26,038,695 (100) 24,172,852 (100)
Raw reads 25,556,975 20,959,989 26,243,698 24,392,550
  1. The number represents the raw data generated directly from small RNA deep sequencing. F0 and F3 represent the bud sample from sugarcane cultivar FN39 with 0 h and 3 h cold (4 °C) treatment, respectively, while R0 and R3 represent the similar samples from cultivar ROC22, respectively