Transcription start site detection parameters | 1 | 2 |
---|---|---|
Minimum number of read starts | 5 | 3 |
Minimum percent of coverage increase | 48 | 48 |
Maximum low coverage read start count | 0 | 20 |
Minimum low coverage read starts | 0 | 3 |
Minimum transcript extension coverage | 20 | 5 |
Maximum distance to feature of leaderless transcripts | 300 | 5500 |
Associate neighboring TSS in a base pair window of | 3 | 3 |