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Table 1 Parameter sets selected for transcription analysis of P. riograndensis SBR5

From: Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology

Transcription start site detection parameters

1

2

Minimum number of read starts

5

3

Minimum percent of coverage increase

48

48

Maximum low coverage read start count

0

20

Minimum low coverage read starts

0

3

Minimum transcript extension coverage

20

5

Maximum distance to feature of leaderless transcripts

300

5500

Associate neighboring TSS in a base pair window of

3

3