BMC Genomics

Table 2 Organisation of the mitochondrial genome of Camallanus cotti

From: The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class

	Position			Codon
Gene	Start	End	Size	Start	Stop	Anticodon	Strand	IG/O
12S	1	714	714				+
tRNA-Trp-2	715	767	53			TCA	+
tRNA-Asp	767	824	58			GTC	+	-1
pseudo-nad2	830	1640	811	ATT	T--		+
tRNA-Tyr	1645	1698	54			GTA	+	4
pseudo-nad1	1701	2110	410				+	2
pseudo-nad5	2390	2760	371				+	279
pseudo-tRNA-Ala	2834	2893	60			TGC	+	73
tRNA-Gln	2883	2935	53			TTG	+	−11
tRNA-Ile	2934	2986	53			GAT	+	−2
cytb	2998	4081	1084	GTT	T--		+	11
cox3	4126	4887	762	ATT	TAA		+	44
tRNA-Thr	4883	4937	55			TGT	+	−5
nad4	4938	6170	1233	GTT	TAG		+
tRNA-Trp	6170	6225	56			TCA	+	−1
tRNA-Asn	6226	6280	55			GTT	+
tRNA-Glu	6282	6336	55			TTC	+	1
pseudo-tRNA-Asp	6337	6369	33			–
nad2	6370	7180	811	ATT	T--		+
tRNA-Tyr − 2	7189	7242	54			GTA	+	8
nad1	7243	8118	876	TTG	TAA		+
tRNA-Lys	8117	8176	60			TTT	+	-2
tRNA-Leu2^(UUR)	8177	8233	57			TAA	+
tRNA-Ser1^(UCN)	8234	8287	54			TCT	+
atp6	8336	9002	667	TTG	T--		+	48
cox1	9091	10,644	1554	TTG	TAG		+	88
tRNA-Cys	10,646	10,700	55			GCA	+	1
tRNA-Met	10,704	10,757	54			CAT	+	3
tRNA-Gly	10,758	10,813	56			TCC	+
cox2	10,814	11,489	676	TTG	T--		+
tRNA-His	11,493	11,543	51			GTG	+	3
AT-rich	11,544	11,780	237				+
tRNA-Arg	11,781	11,833	53			ACG	+
16S	11,881	12,818	938				+	47
nad3	12,808	13,141	334	TTG	T--		+	−11
nad5	13,142	14,725	1584	TTG	TAG		+
tRNA-Ala	14,750	14,803	54			TGC	+	24
tRNA-Gln − 2	14,808	14,860	53			TTG	+	4
tRNA-Ile-2	14,859	14,911	53			GAT	+	-2
cytb-2	14,909	16,007	1099	GTT	T--		+	−3
cox3–2	16,052	16,813	762	ATT	TAA		+	44
tRNA-Thr-2	16,809	16,863	55			TGT	+	−5
pseudo-nad4	16,879	17,121	243				+	15
tRNA-Pro	17,129	17,181	53			TGG	+	7
tRNA-Val	17,181	17,239	59			TAC	+	−1
nad6	17,238	17,673	436	TTG	T--		+	−2
nad4L	17,668	17,901	234	TTG	TAG		+	−6

IG/O: positive values indicate a non-coding intergenic segment, negative values indicate an overlap. Based on the hypothetical evolutionary history of genomic rearrangements (see Additional file 3 for details), we added a suffix ‘-2’ to the names of genes presumed to be copies of the original genes. Where sequence analysis indicated a loss of functionality, we added a prefix ‘pseudo-‘

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ISSN: 1471-2164

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