Table 1 Summary of RNA-Seq data tested on ExUTR
From: ExUTR: a novel pipeline for large-scale prediction of 3′-UTR sequences from NGS data
Species | Tissue | RNA-Seq library | Assembly method | No. of assembled transcripts | ExUTR runtime |
|---|---|---|---|---|---|
Bat (Myotis myotis) | Blood | SRX763357 | reference-based | 22,265 | 2 h 16 min |
de novo | 34,913 | 2 h 25 min | |||
Cow (Bos taurus) | Brain | SRX764721 | reference-based | 40,904 | 4 h 36 min |
de novo | 93,137 | 3 h 57 min | |||
Mouse (Mus musculus) | Kidney | SRX1603138 | reference-based | 53,892 | 5 h 45 min |
de novo | 125,643 | 6 h 02 min | |||
Pig (Sus scrofa) | Blood | SRX242932 | reference-based | 32,431 | 2 h 54 min |
de novo | 28,540 | 0 h 51 min | |||
Rat (Rattus norvegicus) | Brain | SRX471401 | reference-based | 82,558 | 4 h 59 min |
de novo | 69,293 | 1 h 33 min | |||
Human (Home sapiens) | Liver | ERX1217498 | reference-based | 186,053 | 10 h 44 min |
de novo | 713,017 | 10 h 49 min | |||
Jamaican fruit bat (Artibeus jamaicensis) | Spleen | SRX176203 | de novo | 225,089 | 6 h 36 min |
Arctic fox (Vulpes lagopus) | Mixed | ERX632794 | de novo | 147,593 | 6 h 21 min |
Spiny mouse (Acomys cahirinus) | Brain | SRX1818436 | de novo | 203,621 | 5 h 57 min |
Long-haired mouse (Abrothrix hirtus) | Kidney | SRX663111 | de novo | 101,036 | 4 h 38 min |
Grey wolf (Canis lupus) | Blood | SRX1713277 | de novo | 100,501 | 5 h 19 min |
Sika deer (Cervus nippon) | Antler | ERX024230 ERX028792 | de novo | 56,737 | 3 h 26 min |