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Fig. 4 | BMC Genomics

Fig. 4

From: Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

Fig. 4

Listeria sRNA, 5’UTR and CDS evolution and coevolution results. a The Listeria sRNA, 5’UTR and CDS coevolution results available on the Shiny web site. The left frame allows the browsing of the results and the selection of coevolving pairs. The right frame allows visualization of phyletic patterns (i.e. observed and ancestral presence/absence patterns) on the Listeria reference tree for each selected pair. b The Listeria coevolution network available on the web site. The network represents predicted coevolution between L. monocytogenes EGD-e sRNAs and either 5’UTRs or CDS regions (compared to the null hypothesis of independent evolution between these elements). sRNAs are indicated in blue while 5’UTRs and CDS are indicated respectively in yellow and red. The arrows of the network represent three types of coevolution relationships: (i) evolution of the sRNA depends on the presence of the 5’UTR/CDS (blue) (ii) evolution of 5’UTR/CDS depends on the presence of the sRNA (red) and (iii) bidirectional dependency between evolution of the sRNA and the 5’UTR/CDS (green)

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