Fig. 3

Comparative analysis of early and late genes in 14 different bacteriophages. Details can be found in the main text. a A phylogenetic tree built from complete phage proteomes using ARS distance (see Materials and Methods). Phages with significant differences in temporary codon usage are marked by blue. b Viruses with significant (p-value <0.05) separation between early and late genes w.r.t synonymous codons or AA are marked by yellow stars. c Significance of separation between early and late genes w.r.t additional genomic features estimated by Wilcoxon ranksum p-value. Features/viruses with significant (p-value <0.05) separation between the two temporal groups are marked by yellow stars; green is related to higher mean in the case of the early genes and red is related to higher mean in the case of the late genes