Table 3 The SNPs on GGAZ interacted with the SNPs on GGA21, and the Refgenes in the two important regions
From: Identification of genome-wide SNP-SNP interactions associated with important traits in chicken
Chr | Position | Locus | RS# | Refgenes |
|---|---|---|---|---|
Z | 37,246,321 37,440,770 37,562,582 38,066,346 38,424,448 38,545,044 38,795,339 39,120,198 39,189,946 39,223,668 39,256,770 39,415,378 40,393,058 40,411,585 40,514,085 41,304,561 45,300,030 45,695,927 46,745,968 | Gga_rs14765324 Gga_rs16768474 Gga_rs14765605 Gga_rs16768723 Gga_rs14766107 GGaluGA351567 Gga_rs16047676 Gga_rs16781643 Gga_rs14745723 Gga_rs16131986 Gga_rs14787078 Gga_rs16781713 Gga_rs14787751 Gga_rs16782083 Gga_rs16754179 Gga_rs16132921 Gga_rs14015526 GGaluGA352176 Gga_rs14016510 | rs14765324 rs16768474 rs14765605 rs16768723 rs14766107 rs317567123 rs16047676 rs16781643 rs14745723 rs16131986 rs14787078 rs16781713 rs14787751 rs16782083 rs16754179 rs16132921 rs14015526 rs316100592 rs14016510 | VPS13A, AGTPBP1, AUH, CAMK4, CDC14B, CDC42SE2, CFC1B, CKS2, CTSL2, DAPK1, FANCC, FBP1, GADD45B, GNAQ, HABP4, HINT1, ISCA1, LOC427470, LOC770548, MIR1456, MIR23B, MIR24-2, MIR27B, MIR7-1, MIR7439, NAA35, NFIL3, NREP, NTRK2, PTCH1, REEP5, RMI1, ROR2, SEMA4D, SLC25A46, SPINZ, STARD4, SYK, TLE4, WDR36, ZCCHC6 |
21 | 76,023 87,719 113,769 125,790 140,660 145,617 153,135 165,390 197,067 219,311 277,332 291,087 297,203 299,152 304,979 320,390 332,352 332,687 362,742 402,941 423,299 493,436 631,537 647,587 | Gga_rs15179992 GGaluGA181809 Gga_rs15179999 Gga_rs10732124 Gga_rs15180005 Gga_rs15180007 GGaluGA181823 Gga_rs16176404 Gga_rs15180023 Gga_rs15180012 Gga_rs15180032 Gga_rs15180041 Gga_rs16176409 Gga_rs16176412 GGaluGA181852 Gga_rs16176425 GGaluGA181865 GGaluGA181868 GGaluGA181877 Gga_rs14281175 Gga_rs13602346 Gga_rs14281291 Gga_rs16176824 GGaluGA182048 | rs15179992 rs312621287 rs15179999 rs10732124 rs15180005 rs15180007 rs315641745 rs16176404 rs15180023 rs15180012 rs15180032 rs15180041 rs16176409 rs16176412 rs314825899 rs16176425 rs314965954 rs313888034 rs316891294 rs14281175 rs13602346 rs14281291 rs16176824 rs312963281 | PADI3, PADI1, PADI2, SDHB, MRPS16, PARK7, UTS2, PER3, VAMP3, PHF13, ZBTB48, ICMT, RPL22 |