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Table 3 The SNPs on GGAZ interacted with the SNPs on GGA21, and the Refgenes in the two important regions

From: Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Chr Position Locus RS# Refgenes
Z 37,246,321
37,440,770
37,562,582
38,066,346
38,424,448
38,545,044
38,795,339
39,120,198
39,189,946
39,223,668
39,256,770
39,415,378
40,393,058
40,411,585
40,514,085
41,304,561
45,300,030
45,695,927
46,745,968
Gga_rs14765324
Gga_rs16768474
Gga_rs14765605
Gga_rs16768723
Gga_rs14766107
GGaluGA351567
Gga_rs16047676
Gga_rs16781643
Gga_rs14745723
Gga_rs16131986
Gga_rs14787078
Gga_rs16781713
Gga_rs14787751
Gga_rs16782083
Gga_rs16754179
Gga_rs16132921
Gga_rs14015526
GGaluGA352176
Gga_rs14016510
rs14765324
rs16768474
rs14765605
rs16768723
rs14766107
rs317567123
rs16047676
rs16781643
rs14745723
rs16131986
rs14787078
rs16781713
rs14787751
rs16782083
rs16754179
rs16132921
rs14015526
rs316100592
rs14016510
VPS13A, AGTPBP1, AUH, CAMK4, CDC14B, CDC42SE2, CFC1B, CKS2, CTSL2, DAPK1, FANCC, FBP1, GADD45B, GNAQ, HABP4, HINT1, ISCA1, LOC427470, LOC770548, MIR1456, MIR23B, MIR24-2, MIR27B, MIR7-1, MIR7439, NAA35, NFIL3, NREP, NTRK2, PTCH1, REEP5, RMI1, ROR2, SEMA4D, SLC25A46, SPINZ, STARD4, SYK, TLE4, WDR36, ZCCHC6
21 76,023
87,719
113,769
125,790
140,660
145,617
153,135
165,390
197,067
219,311
277,332
291,087
297,203
299,152
304,979
320,390
332,352
332,687
362,742
402,941
423,299
493,436
631,537
647,587
Gga_rs15179992
GGaluGA181809
Gga_rs15179999
Gga_rs10732124
Gga_rs15180005
Gga_rs15180007
GGaluGA181823
Gga_rs16176404
Gga_rs15180023
Gga_rs15180012
Gga_rs15180032
Gga_rs15180041
Gga_rs16176409
Gga_rs16176412
GGaluGA181852
Gga_rs16176425
GGaluGA181865
GGaluGA181868
GGaluGA181877
Gga_rs14281175
Gga_rs13602346
Gga_rs14281291
Gga_rs16176824
GGaluGA182048
rs15179992
rs312621287
rs15179999
rs10732124
rs15180005
rs15180007
rs315641745
rs16176404
rs15180023
rs15180012
rs15180032
rs15180041
rs16176409
rs16176412
rs314825899
rs16176425
rs314965954
rs313888034
rs316891294
rs14281175
rs13602346
rs14281291
rs16176824
rs312963281
PADI3, PADI1, PADI2, SDHB, MRPS16, PARK7, UTS2, PER3, VAMP3, PHF13, ZBTB48, ICMT, RPL22