From: Population differentiation in allele frequencies of obesity-associated SNPs
SNP ID | chr | Positiona | functionb | Nearby / containing geneb | Effect allelec | Other allelec | African EAF | American EAF | East Asian EAF | European EAF | South Asian EAF | Global EAF | GWAS p-value |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs1011731 | 1 | 172,346,548 | intron | DNM3 | G | A | 0.90 | 0.36 | 0.13 | 0.42 | 0.43 | 0.48 | 1.0E-17 |
rs10146997 | 14 | 79,945,162 | intron | NRXN3 | G | A | 0.41 | 0.20 | 0.00 | 0.21 | 0.11 | 0.20 | 5.0E-08 |
rs10150332 | 14 | 79,936,964 | intron | NRXN3 | C | T | 0.44 | 0.20 | 0.00 | 0.21 | 0.11 | 0.21 | 3.0E-11 |
rs10182181 | 2 | 25,150,296 | intergene | ADCY3 - DNAJC27 | G | A | 0.91 | 0.38 | 0.44 | 0.47 | 0.48 | 0.57 | 1.0E-17 |
rs10195252 | 2 | 165,513,091 | intron | LOC101929615 | T | C | 0.20 | 0.74 | 0.90 | 0.56 | 0.79 | 0.60 | 2.0E-24 |
rs10261878 | 7 | 25,950,545 | intergene | UBA52P1 - MIR148A | C | A | 0.34 | 0.89 | 0.96 | 0.94 | 0.96 | 0.78 | 1.0E-10 |
rs1055144 | 7 | 25,871,109 | ncRNA | LOC100506236 | T | C | 0.04 | 0.16 | 0.43 | 0.21 | 0.46 | 0.25 | 1.0E-24 |
rs10767664 | 11 | 27,725,986 | intron | BDNF | A | T | 0.95 | 0.83 | 0.51 | 0.77 | 0.70 | 0.76 | 5.0E-26 |
rs10838738 | 11 | 47,663,049 | intron | MTCH2 | G | A | 0.05 | 0.40 | 0.28 | 0.35 | 0.33 | 0.26 | 5.0E-09 |
rs11030104 | 11 | 27,684,517 | intron;intron | BDNF, BDNF-AS | A | G | 0.98 | 0.83 | 0.51 | 0.78 | 0.74 | 0.78 | 2.0E-20 |
rs11847697 | 14 | 30,515,112 | intergene | PRKD1 - RPS6P24 | T | C | 0.41 | 0.05 | 0.00 | 0.05 | 0.11 | 0.15 | 6.0E-11 |
rs12229654 | 12 | 111,414,461 | intergene | MYL2 - CUX2 | T | G | 1.00 | 1.00 | 0.84 | 1.00 | 1.00 | 0.97 | 5.0E-09 |
rs1294421 | 6 | 6,743,149 | intergene | LY86 - BTF3P7 | G | T | 0.77 | 0.50 | 0.26 | 0.61 | 0.40 | 0.53 | 2.0E-17 |
rs13034723 | 2 | 190,985,680 | intron | C2orf88 | A | G | 0.06 | 0.45 | 0.69 | 0.46 | 0.70 | 0.45 | 2.0E-08 |
rs13389219 | 2 | 165,528,876 | intergene | EIF3EP3 - COBLL1 | C | T | 0.20 | 0.74 | 0.90 | 0.56 | 0.78 | 0.60 | 3.0E-08 |
rs1443512 | 12 | 54,342,684 | intergene | HOXC13 - HOXC12 | A | C | 0.64 | 0.21 | 0.17 | 0.22 | 0.32 | 0.34 | 6.0E-17 |
rs1555543 | 1 | 96,944,797 | intergene | EEF1A1P11 - NDUFS5P2 | C | A | 0.39 | 0.57 | 0.88 | 0.58 | 0.51 | 0.58 | 4.0E-10 |
rs1957894 | 14 | 61,908,111 | intron | PRKCH | T | G | 0.77 | 0.13 | 0.41 | 0.08 | 0.11 | 0.34 | 3.0E-10 |
rs2030323 | 11 | 27,728,539 | intron | BDNF | C | A | 0.95 | 0.83 | 0.51 | 0.77 | 0.70 | 0.76 | 3.0E-22 |
rs2075064 | 9 | 126,783,847 | intron | LHX2 | C | T | 0.93 | 0.54 | 0.58 | 0.56 | 0.65 | 0.68 | 2.0E-08 |
rs2307111 | 5 | 75,003,678 | missense | POC5 | T | C | 0.08 | 0.52 | 0.47 | 0.60 | 0.40 | 0.38 | 3.0E-12 |
rs2568958 | 1 | 72,765,116 | intergene | GDI2P2 - RPL31P12 | A | G | 0.53 | 0.70 | 0.93 | 0.64 | 0.62 | 0.68 | 4.0E-16 |
rs2815752 | 1 | 72,812,440 | intergene | RPL31P12 - KRT8P21 | A | G | 0.53 | 0.70 | 0.93 | 0.64 | 0.62 | 0.68 | 2.0E-22 |
rs2890652 | 2 | 142,959,931 | intergene | RPS16P3 - KYNU | C | T | 0.38 | 0.09 | 0.00 | 0.17 | 0.06 | 0.16 | 1.0E-10 |
rs29941 | 19 | 34,309,532 | intergene | KCTD15 - RPS4XP20 | G | A | 0.85 | 0.61 | 0.24 | 0.67 | 0.62 | 0.61 | 7.0E-12 |
rs3101336 | 1 | 72,751,185 | intergene | GDI2P2 - RPL31P12 | C | T | 0.53 | 0.70 | 0.93 | 0.64 | 0.62 | 0.68 | 1.0E-13 |
rs3810291 | 19 | 47,569,003 | 3′-UTR | ZC3H4 | A | G | 0.09 | 0.51 | 0.27 | 0.66 | 0.40 | 0.36 | 2.0E-12 |
rs591166 | 18 | 57,841,589 | intergene | RPS3AP49 - MC4R | A | T | 0.82 | 0.38 | 0.22 | 0.43 | 0.49 | 0.50 | 7.0E-14 |
rs6265 | 11 | 27,679,916 | missense;ncRNA | BDNF, BDNF-AS | C | T | 0.99 | 0.85 | 0.51 | 0.80 | 0.80 | 0.80 | 5.0E-10 |
rs6545814 | 2 | 25,131,316 | intron | ADCY3 | G | A | 0.85 | 0.35 | 0.42 | 0.43 | 0.46 | 0.54 | 1.0E-13 |
rs671 | 12 | 112,241,766 | missense | ALDH2 | G | A | 1.00 | 1.00 | 0.83 | 1.00 | 1.00 | 0.96 | 3.0E-11 |
rs713586 | 2 | 25,158,008 | intergene | ADCY3 - DNAJC27 | C | T | 0.92 | 0.38 | 0.48 | 0.47 | 0.48 | 0.58 | 6.0E-22 |
rs718314 | 12 | 26,453,283 | intergene | SSPN - ITPR2 | G | A | 0.19 | 0.49 | 0.70 | 0.24 | 0.24 | 0.35 | 1.0E-17 |
rs7184597 | 16 | 28,921,809 | intron | RABEP2 | T | C | 0.01 | 0.45 | 0.12 | 0.28 | 0.16 | 0.18 | 7.0E-09 |
rs7359397 | 16 | 28,885,659 | downstream of SH2B1 | SH2B1 | T | C | 0.01 | 0.47 | 0.12 | 0.33 | 0.19 | 0.19 | 2.0E-20 |
rs7531118 | 1 | 72,837,239 | intergene | RPL31P12 - KRT8P21 | C | T | 0.05 | 0.38 | 0.26 | 0.55 | 0.29 | 0.29 | 2.0E-17 |
rs7586879 | 2 | 25,116,977 | intron | ADCY3 | T | C | 0.86 | 0.29 | 0.37 | 0.35 | 0.43 | 0.50 | 4.0E-08 |
rs7708584 | 5 | 153,543,466 | intergene | MFAP3 - GALNT10 | A | G | 0.26 | 0.63 | 0.96 | 0.44 | 0.47 | 0.53 | 5.0E-14 |
rs9356744 | 6 | 20,685,486 | intron | CDKAL1 | T | C | 0.30 | 0.67 | 0.61 | 0.68 | 0.71 | 0.57 | 5.0E-13 |