Table 1 Genus-level and species-level average accuracy of CLIOR and Clark-l, for various simulated (N=16) and synthetic (N=5) metagenomes
From: Higher recall in metagenomic sequence classification exploiting overlapping reads
Dataset | Tool | Species | Genus | ||||
|---|---|---|---|---|---|---|---|
| Â | Â | Prec | Rec | F-m | Prec | Rec | F-m |
Simulated | Clark-l | 0.869 | 0.555 | 0.670 | 0.988 | 0.629 | 0.762 |
| Â | CLIOR | 0.978 | 0.973 | 0.976 | 0.992 | 0.986 | 0.989 |
| Â | Diff | 0.109 | 0.419 | 0.306 | 0.004 | 0.357 | 0.227 |
Synthetic | Clark-l | 0.740 | 0.425 | 0.537 | 0.902 | 0.522 | 0.656 |
| Â | CLIOR | 0.714 | 0.536 | 0.607 | 0.892 | 0.680 | 0.765 |
| Â | Diff | -0.026 | 0.110 | 0.070 | -0.010 | 0.159 | 0.109 |