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Fig. 3 | BMC Genomics

Fig. 3

From: Effect of two non-synonymous ecto-5′-nucleotidase variants on the genetic architecture of inosine 5′-monophosphate (IMP) and its degradation products in Japanese Black beef

Fig. 3

The significant region and linkage disequilibrium (LD) from 65.4 to 66.6 Mbp on BTA 9. a The regional plots of the locus are associated with inosine 5′-monophosphate (IMP), inosine, and hypoxanthine. The x-axis indicates the Mbp, and the y-axis indicates p-values (˗ log10). The gene loci and their strand were annotated based on Btau4.6 assembly from the bovine genome database (http://bovinegenome.org/). The dashed red line indicates the threshold of the Bonferroni 5% significance level. The p-values of SNPs on the SNP array (unfilled points) and detected variants in ecto-5′-nucleotidase (NT5E) (filled points) were plotted. b LD coefficients (r2) between the SNPs in this region. Black fields display r2 values >0.80, and white and gray fields display r2 values <0.80

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