Table 2 List of 13 novel bins identified from the four projects, the closest neighbor with similarity index using CheckM, PhyloSift, RAST, and JSpeciesWS
From: Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
Project | Number of contigs | Completeness | GC (%) | Genome size (Mbp) | Gene count | CheckM | PhyloSift | RAST | JSpeciesWS (best hit that has >90%) |
|---|---|---|---|---|---|---|---|---|---|
coral_IL_high_13 | 769 | 100 | 53.7 | 3.96 | 4342 | Parvibaculum lavamentivorans | Alphaproteobacteria strain IMCC14465 | Parvibaculum lavamentivorans | Pelagibacter ubique |
coral_IL_high_14 | 1215 | 99.14 | 44.3 | 8.85 | 7897 | – | Alphaproteobacteria strain HIMB5 | Alteromonas macleodii | Alteromonas mediterranea |
Alteromonas naphthalenivorans | |||||||||
coral_IL_high_26 | 1554 | 87.93 | 34.6 | 6.72 | 7756 | Verrucomicrobia | SAR86 cluster bacterium SAR86A | Ruegeria sp. R11, Roseobacter denitrificans OCh 114 | Alteromonas mediterranea |
coral_IL_high_28 | 270 | 52.27 | 39.4 | 1.03 | 1175 | Alteromonas taeanensis | Flavobacteria strain MS024 2A | Polaribacter sp. MED152 | SAR116 cluster alpha proteobacterium HIMB100 |
coral_IL_high_41 | 825 | 79.67 | 56.7 | 2.99 | 3384 | – | Gammproteobacteria strain HIMB55 | marine gammaproteobacteria strain HTCC2080 | – |
coral_IL_high_49 | 3536 | 50.62 | 51.1 | 12.97 | 12,794 | Bacteria | – | Gammaproteobacteria strain IMCC3088 | – |
coral_IL_high_54 | 297 | 93.1 | 37.8 | 2.51 | 2776 | unresolved | SAR86 cluster strain SAR86E | SAR86 cluster bacterium SAR86E | – |
kelp_IL_low_5 | 1046 | 90.7 | 62.8 | 5.16 | 5903 | Oceanibulbus indolifex | Oceanibulbus indolifex | Oceanibulbus indolifex HEL-45 | – |
kelp_IT_high_1 | 848 | 82.45 | 51.6 | 5.04 | 7180 | Rubritalea marina | Verrucomicrobia strain SCGC AAA168 F10 | Akkermansia muciniphila, Verrucomicrobium spinosum DSM 4136 | Marinobacter salarius |
Marinobacter algicola | |||||||||
kelp_IT_high_7 | 487 | 77.27 | 43.3 | 1.97 | 3260 | Owenweeksia hongkongensis | Flavobacteria strain MS024 2A | Kordia algicidaOT-1 | – |
kelp_IT_high_8 | 1224 | 54.55 | 52.1 | 2.98 | 5637 | Limnobacter | Limnobacter sp.MED105 | Limnobacter sp.MED105 | Marinobacter sps |
kelp_IT_high_16 | 1011 | 57.94 | 39.5 | 2.06 | 3981 | Flavobacteriaceae | SAR86 cluster strain SAR86C | Tenacibaculum sp. MED152 | – |
kelp_IT_high_20 | 836 | 84.8 | 52 | 4.19 | 6227 | Rhodobacteraceae | Rhodobacteraceae strain HTCC2150 | Roseovarius nubinhibens | – |