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Table 2 List of 13 novel bins identified from the four projects, the closest neighbor with similarity index using CheckM, PhyloSift, RAST, and JSpeciesWS

From: Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes

Project Number of contigs Completeness GC (%) Genome size (Mbp) Gene count CheckM PhyloSift RAST JSpeciesWS (best hit that has >90%)
coral_IL_high_13 769 100 53.7 3.96 4342 Parvibaculum lavamentivorans Alphaproteobacteria strain IMCC14465 Parvibaculum lavamentivorans Pelagibacter ubique
coral_IL_high_14 1215 99.14 44.3 8.85 7897 Alphaproteobacteria strain HIMB5 Alteromonas macleodii Alteromonas mediterranea
Alteromonas naphthalenivorans
coral_IL_high_26 1554 87.93 34.6 6.72 7756 Verrucomicrobia SAR86 cluster bacterium SAR86A Ruegeria sp. R11, Roseobacter denitrificans OCh 114 Alteromonas mediterranea
coral_IL_high_28 270 52.27 39.4 1.03 1175 Alteromonas taeanensis Flavobacteria strain MS024 2A Polaribacter sp. MED152 SAR116 cluster alpha proteobacterium HIMB100
coral_IL_high_41 825 79.67 56.7 2.99 3384 Gammproteobacteria strain HIMB55 marine gammaproteobacteria strain HTCC2080
coral_IL_high_49 3536 50.62 51.1 12.97 12,794 Bacteria Gammaproteobacteria strain IMCC3088
coral_IL_high_54 297 93.1 37.8 2.51 2776 unresolved SAR86 cluster strain SAR86E SAR86 cluster bacterium SAR86E
kelp_IL_low_5 1046 90.7 62.8 5.16 5903 Oceanibulbus indolifex Oceanibulbus indolifex Oceanibulbus indolifex HEL-45
kelp_IT_high_1 848 82.45 51.6 5.04 7180 Rubritalea marina Verrucomicrobia strain SCGC AAA168 F10 Akkermansia muciniphila, Verrucomicrobium spinosum DSM 4136 Marinobacter salarius
Marinobacter algicola
kelp_IT_high_7 487 77.27 43.3 1.97 3260 Owenweeksia hongkongensis Flavobacteria strain MS024 2A Kordia algicidaOT-1
kelp_IT_high_8 1224 54.55 52.1 2.98 5637 Limnobacter Limnobacter sp.MED105 Limnobacter sp.MED105 Marinobacter sps
kelp_IT_high_16 1011 57.94 39.5 2.06 3981 Flavobacteriaceae SAR86 cluster strain SAR86C Tenacibaculum sp. MED152
kelp_IT_high_20 836 84.8 52 4.19 6227 Rhodobacteraceae Rhodobacteraceae strain HTCC2150 Roseovarius nubinhibens