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Table 1 Genome statistics of Sclerospora graminicola (Sg) and other previously sequenced oomycetesa

From: Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Characteristic Sg Plh Hpa Phi Phs
Estimated genome size 360 Mbp 100 Mbp 100 Mbp 240 Mbp 95 Mbp
Number of scaffolds 64,505 3162 3408 4921 1810
N50 scaffold length 24.3 kbp 1540 kbp 332 kbp 1570 kbp 463 kbp
Total scaffold length 254 Mbp 75 Mbp 78.4 Mbp 228.5 Mbp 86.0 Mbp
GC content 46.4% 45.3% 47% 51.0% 54.4%
Repeat (%) 73% 40% 42% 74% 39%
Number of genes 16,736 15,469 14,321 17,787 18,969
 Secreted protein genes 1220 631 762 1568 1701
CEGMA
 Group 1b 92.42% 93.94% 89.5% 96.97% 96.97%
 Group 2 b 94.64% 96.43% 96.5% 96.43% 98.21%
 Group 3 b 98.36% 98.36% 98.5% 96.72% 100.00%
 Group 4 b 96.92% 100.00% 97.0% 96.92% 98.46%
  1. a Plh Plasmopara halstedii, Hpa Hyaloperonospora arabidopsidis, Phi Phytophthora infestans, Phs Phytophthora sojae
  2. bThe CEGs are split into 4 groups with Group 1 being the least conserved between organisms, and Group 4 being the most conserved between organisms