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Table 1 Genome statistics of Sclerospora graminicola (Sg) and other previously sequenced oomycetesa

From: Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

Characteristic

Sg

Plh

Hpa

Phi

Phs

Estimated genome size

360 Mbp

100 Mbp

100 Mbp

240 Mbp

95 Mbp

Number of scaffolds

64,505

3162

3408

4921

1810

N50 scaffold length

24.3 kbp

1540 kbp

332 kbp

1570 kbp

463 kbp

Total scaffold length

254 Mbp

75 Mbp

78.4 Mbp

228.5 Mbp

86.0 Mbp

GC content

46.4%

45.3%

47%

51.0%

54.4%

Repeat (%)

73%

40%

42%

74%

39%

Number of genes

16,736

15,469

14,321

17,787

18,969

 Secreted protein genes

1220

631

762

1568

1701

CEGMA

 Group 1b

92.42%

93.94%

89.5%

96.97%

96.97%

 Group 2 b

94.64%

96.43%

96.5%

96.43%

98.21%

 Group 3 b

98.36%

98.36%

98.5%

96.72%

100.00%

 Group 4 b

96.92%

100.00%

97.0%

96.92%

98.46%

  1. a Plh Plasmopara halstedii, Hpa Hyaloperonospora arabidopsidis, Phi Phytophthora infestans, Phs Phytophthora sojae
  2. bThe CEGs are split into 4 groups with Group 1 being the least conserved between organisms, and Group 4 being the most conserved between organisms