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Table 3 Parameter estimates and likelihood ratio tests for the branch model

From: Genome-wide analysis of the Solanum tuberosum (potato) trehalose-6-phosphate synthase (TPS) gene family: evolution and differential expression during development and stress

Model

p a

LnLb

Estimates of Parameters

2â–³lc

df

p

Positively selected sites

M0 (one ratio model)

1

-47935.395

ω=0.143

-

-

-

None

Branch-specific model (Model 2: two ratios)

 Estimate ω for I-1

2

-47935.222

ω0=0.143, ωI1= 0.083

Model 2 Vs M0: 0.346

1

0.556

-

 Estimate ω for II-1

2

-47930.020

ω0= 0.146, ωII1= 0.083

Model 2 Vs M0: 10.750

1

0.001

-

 Estimate ω for II-2

2

-47924.924

ω0= 0.147, ωII2= 0.065

Model 2 Vs M0: 20.943

1

0.091

-

 Estimate ω for II-3

2

-47935.383

ω0= 0.143, ωII3= 0.147

Model 2 Vs M0: 0.024

1

0.000

-

 Estimate ω for II-4

2

-47934.740

ω0= 0.143, ωII4= 0.199

Model 2 Vs M0: 1.310

1

0.252

-

 Estimate ω for II-5

2

-47935.385

ω0= 0.143, ωII5= 0.148

Model 2 Vs M0: 0.020

1

0.888

-

  1. aThe number of free parameters for the ω ratios
  2. bLikelihood of the model
  3. c2(l1-l0)