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Table 3 Databases used for RNA Seq experiments

From: Association of variation in the sugarcane transcriptome with sugar content

Features SoGI SUGIT SAS
Total number of contigs 121,342 107,598 43,141
Total number of bases 88,397,709 166,929,028 35,730,322
Longest contig (bp) 4854 18,858 6193
Shortest contig (bp) 100 307 56
N50 (bp) 729 1994 827
N75 (bp) 642 1269 641
  1. SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences; bp- base pairs