Table 4 Reads from each genotype with details of mapping to three different databases SoGI, SUGIT and SAS
From: Association of variation in the sugarcane transcriptome with sugar content
Code | Top internode | Bottom internode | ||||||
|---|---|---|---|---|---|---|---|---|
Trimmed reads | Reads mapped (%) | Trimmed reads | Reads mapped (%) | |||||
SoGI | SUGIT | SAS | SoGI | SUGIT | SAS | |||
High sugar genotypes | ||||||||
 G04 | 24,837,412 | 52.12 | 70.65 | 54.86 | 22,869,941 | 46.03 | 69.38 | 52.64 |
 G05 | 8,578,357 | 48.63 | 69.34 | 57.65 | 47,973,820 | 49.63 | 69.35 | 52.56 |
 G06 | 12,971,379 | 52.41 | 74.20 | 56.09 | 24,967,893 | 47.72 | 71.51 | 54.77 |
 G07 | 25,204,740 | 51.85 | 70.79 | 55.45 | 23,694,629 | 50.42 | 70.45 | 55.07 |
 G09 | 36,810,635 | 52.11 | 73.64 | 56.87 | 36,366,607 | 54.16 | 80.44 | 56.56 |
 G13 | 19,443,531 | 52.45 | 69.10 | 51.22 | 24,196,385 | 50.35 | 68.45 | 54.57 |
 G14 | 37,845,062 | 52.38 | 67.85 | 56.98 | 19,172,922 | 51.38 | 68.90 | 55.90 |
Low sugar genotypes | ||||||||
 G01 | 19,224,245 | 47.95 | 70.76 | 54.87 | 41,184,328 | 52.45 | 78.06 | 55.75 |
 G02 | 42,714,286 | 45.45 | 66.43 | 52.42 | 79,760,012 | 54.89 | 70.48 | 57.26 |
 G10 | 15,278,340 | 51.09 | 72.10 | 54.05 | 80,811,427 | 55.42 | 81.09 | 56.65 |
 G16 | 28,875,842 | 52.19 | 75.47 | 56.07 | 46,037,690 | 55.19 | 80.31 | 56.07 |
 G18 | 64,789,858 | 54.13 | 71.65 | 56.69 | 66,628,598 | 54.47 | 72.14 | 53.71 |
 G19 | 24,882,334 | 46.73 | 67.67 | 54.39 | 30,954,783 | 56.50 | 72.57 | 56.97 |
 G20 | 6,529,582 | 55.51 | 73.44 | 55.82 | 45,500,054 | 55.51 | 80.15 | 55.82 |