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Table 4 Reads from each genotype with details of mapping to three different databases SoGI, SUGIT and SAS

From: Association of variation in the sugarcane transcriptome with sugar content

Code Top internode Bottom internode
Trimmed reads Reads mapped (%) Trimmed reads Reads mapped (%)
SoGI SUGIT SAS SoGI SUGIT SAS
High sugar genotypes
 G04 24,837,412 52.12 70.65 54.86 22,869,941 46.03 69.38 52.64
 G05 8,578,357 48.63 69.34 57.65 47,973,820 49.63 69.35 52.56
 G06 12,971,379 52.41 74.20 56.09 24,967,893 47.72 71.51 54.77
 G07 25,204,740 51.85 70.79 55.45 23,694,629 50.42 70.45 55.07
 G09 36,810,635 52.11 73.64 56.87 36,366,607 54.16 80.44 56.56
 G13 19,443,531 52.45 69.10 51.22 24,196,385 50.35 68.45 54.57
 G14 37,845,062 52.38 67.85 56.98 19,172,922 51.38 68.90 55.90
Low sugar genotypes
 G01 19,224,245 47.95 70.76 54.87 41,184,328 52.45 78.06 55.75
 G02 42,714,286 45.45 66.43 52.42 79,760,012 54.89 70.48 57.26
 G10 15,278,340 51.09 72.10 54.05 80,811,427 55.42 81.09 56.65
 G16 28,875,842 52.19 75.47 56.07 46,037,690 55.19 80.31 56.07
 G18 64,789,858 54.13 71.65 56.69 66,628,598 54.47 72.14 53.71
 G19 24,882,334 46.73 67.67 54.39 30,954,783 56.50 72.57 56.97
 G20 6,529,582 55.51 73.44 55.82 45,500,054 55.51 80.15 55.82
  1. SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences