Skip to main content

Table 5 Details of differentially expressed genes obtained from three different RNA-Seq experiments at FDR 0.05 and 0.01

From: Association of variation in the sugarcane transcriptome with sugar content

Experiment FDR 0.01 FDR 0.05  
Up Down Total Up Down Total Reference
SoGI-DGE
 HST vs HSB 31 31 1 58 59 HSB
 HSB vs LSB 101 34,375 34,476 111 43,109 43,220 LSB
 LST vs LSB 86 30,723 30,809 102 42,149 42,251 LSB
SUGIT-DGE
 HST vs HSB 21 21 38 38 HSB
 HSB vs LSB 132 18,411 18,543 140 30,129 30,269 LSB
 LST vs LSB 114 11,599 11,713 142 26,626 26,768 LSB
SAS-DGE
 HST vs HSB 2591 235 2826 4752 383 5135 HSB
 HSB vs LSB 38 20,449 20,487 41 24,233 24,274 LSB
 LST vs LSB 26 19,782 19,808 36 24,438 24,474 LSB
  1. HSB, high sugar bottom internode; HST, high sugar top internode; LSB-low sugar bottom internode; LST-low sugar top internode; SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences