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Table 6 Details of differentially expressed genes obtained from three different RNA seq experiments at FDR 0.01 at three different fold change settings

From: Association of variation in the sugarcane transcriptome with sugar content

  HSB vs LSB LST vs LSB HST vs HSB
Fold change Fold change Fold change
≥2 ≥10 <2 ≥2 ≥10 <2 ≥2 ≥10 <2
SoGI- DGE (34476)
SuSy 2
SuT2
(1723)
SuSy 2
SuT2
(7) (30809)
SuSy 2
SuT2
(3279)
SuSy 2
SuT
(5) (31) (5)
PAL
CHS
CCoAR
SUGIT- DGE (18543)
SuSy 2
SuT2a
(952)
SuSy 2
SuT2a
(2) (11716)
SuSy 2
SuT2
(872)
SuSy 2
SuT3
(2) (21) (3)
TC
SAS-DGE (20487)
SuSy 2
SuT3
(575) (4) (19808)
SuSy 2
SuT2
(1706)
SuSy 1
SuT3
SWEET3
SPS1
(2) (2826) (74+)
(3-)
FE, LAC, BE
(794+)
(172-)
SPP2
SWEET3 SWEET16
SPT
  1. SuSy-sucrose synthase; SuT-sucrose transporter; SWEET-bidirectional sugar transporter sweet; FL-Ferruloyl esterase; LAC-laccase; BE-beta expansin; SPP-sucrose phosphate phosphatase; SPT-sugar phosphate phosphate translocator; HSB, high sugar bottom internode; HST, high sugar top internode; LSB-low sugar bottom internode; LST-low sugar top internode; SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences. The numbers in brackets indicate the number of DEGs obtained at that fold change setting, while the sucrose and sugar related genes within the DEGs are indicated below them. (+) and (−) denote upregulation and down regulation respectively. The genes in bold letters are present in all the three DEGs