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Table 9 DEGs obtained between high sugar top (HST) vs high sugar bottom (HSB) internode samples with three different databases SoGI, SUGIT and SAS. Shown here are some of the sucrose/sugar related transcripts

From: Association of variation in the sugarcane transcriptome with sugar content

Feature ID Description Fold change (original values) FDR < 0.01
SoGI-DGE
 TC125737 Phenylalanine ammonia-lyase −16.27 4.08E-03
 TC131133 Chalcone synthase 5 −13.79 4.24E-05
 CA207335 Cinnamoyl-CoA reductase −12.11 5.19E-03
 CA212197 Beta-amyrin synthase −11.85 0.01
 CA113829 LIM transcription factor homolog −5.75 7.51E-03
 CA065092 Universal stress protein family protein ERD65 −5.43 1.48E-09
 TC124516 4-coumarate coenzyme A ligase −4.59 4.16E-03
 TC137240 Serine/threonine-protein kinase Nek5 −3.5 0.01
SUGIT-DGE
 c98442f1p02354 Terpene cyclase mutase family −18.71 0.00608
 c61441f1p11782 Phenylalanine ammonia lyase −6.44 0.00382
SAS-DGE
 SCJFRT1010B12.g Sugar phosphate phosphate translocator 2.43 3.49E-08
 SCEZLR1031D07.g Sucrose phosphate phosphatase 2 2.17 6.51E-03
 SCACSB1117F03.g Sucrose synthase 1.24 4.07E-03
 SCEZSD1079C10.g Bidirectional sugar transporter SWEET16-like 1.12 1.87E-04
  1. SoGI-Saccharum officinarum gene indices; SUGIT-Sugarcane Iso-Seq transcriptome database; SAS-sugarcane assembled sequences
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