Table 2 Mapman analysis of DEGs related to cell wall synthesis in Atlantic and Waneta in response to Lso infection. Negative Fold Change values denote the fold decrease in transcript abundance (FPKM) in Lso + samples compared to Lso- samples, e.g., down-regulated genes in response to Lso infection; positive Fold Change values denote up-regulated genes. Bin name and descriptors are provided
Bin Name | Transcript id | Fold Change Atlantic | Fold Change Waneta | Gene Description |
|---|---|---|---|---|
cell wall.cellulose synthesis | PGSC0003DMT400007050 | −28.6 | – | Cellulose synthase-like A1 |
cell wall.cellulose synthesis | PGSC0003DMT400026046 | – | −5.78 | Transferase, transferring glycosyl groups |
cell wall.cellulose synthesis | PGSC0003DMT400068221 | −10.36 | – | UPA15 |
cell wall.modification | PGSC0003DMT400003608 | −4.43 | −2.07 | Expansin |
cell wall.modification | PGSC0003DMT400022769 | −6.02 | – | Expansin |
cell wall.modification | PGSC0003DMT400025776 | −5.35 | – | Expansin11 |
cell wall.modification | PGSC0003DMT400038406 | – | −10.23 | Xyloglucan endotransglucosylase-hydrolase XTH3 |
cell wall.modification | PGSC0003DMT400038411 | – | −16.06 | Xyloglucan endotransglucosylase-hydrolase XTH3 |
cell wall.modification | PGSC0003DMT400038412 | – | −8.31 | Xyloglucan endotransglucosylase-hydrolase XTH3 |
cell wall.modification | PGSC0003DMT400044562 | – | −34.42 | Xyloglucan endotransglycosylase |
cell wall.modification | PGSC0003DMT400047948 | – | −5.33 | Expansin |
cell wall.modification | PGSC0003DMT400055138 | −13.58 | – | Xyloglucan endotransglucosylase-hydrolase XTH7 |
cell wall.modification | PGSC0003DMT400061841 | −6.14 | – | Xyloglucan endotransglucosylase/hydrolase protein A |
cell wall.modification | PGSC0003DMT400063689 | −49.43 | 2.82 | Xyloglucan endotransglucosylase/hydrolase 1 |
cell wall.modification | PGSC0003DMT400067358 | −3.78 | – | Xyloglucan endotransglycosylase/hydrolase 16 protein |
cell wall.modification | PGSC0003DMT400078182 | −14.74 | – | Expansin18 |
cell wall.precursor synthesis.AXS | PGSC0003DMT400018431 | – | −4.09 | UDP-apiose/xylose synthase |
cell wall.precursor synthesis.UGD | PGSC0003DMT400003666 | – | −2.46 | UDP-glucose dehydrogenase 2 |
cell wall.precursor synthesis.GAE | PGSC0003DMT400020223 | – | −19.16 | UDP-glucuronate 5-epimerase |
cell wall.precursor synthesis.GAE | PGSC0003DMT400029181 | – | −2.58 | UDP-glucuronate 5-epimerase |
cell wall.cellulose synthesis.cellulose synthase | PGSC0003DMT400008183 | – | −5.39 | Glycosyltransferase, CAZy family GT2 |
cell wall.cellulose synthesis.cellulose synthase | PGSC0003DMT400008184 | – | −14.79 | Glycosyltransferase, CAZy family GT2 |
cell wall.cellulose synthesis.cellulose synthase | PGSC0003DMT400009764 | – | −2.2 | Cellulose synthase |
cell wall.cellulose synthesis.cellulose synthase | PGSC0003DMT400030678 | −30.63 | −5.39 | Cellulose synthase |
cell wall.cellulose synthesis.cellulose synthase | PGSC0003DMT400073085 | −4.76 | – | Cellulose synthase catalytic subunit |
cell wall.cellulose synthesis.COBRA | PGSC0003DMT400065840 | – | −13.12 | Protein COBRA |
cell wall.cell wall proteins.AGPs.AGP | PGSC0003DMT400033202 | −29.85 | – | Fasciclin-like arabinogalactan protein 13 |
cell wall.cell wall proteins.AGPs.AGP | PGSC0003DMT400044769 | −15.53 | – | Fasciclin-like arabinogalactan protein 19 |
cell wall.cell wall proteins.AGPs.AGP | PGSC0003DMT400076660 | −30.56 | – | Fasciclin-like arabinogalactan protein 10 |
cell wall.cell wall proteins. Proline rich proteins | PGSC0003DMT400004126 | −11.75 | −2.09 | Proline-rich protein |
cell wall.cell wall proteins.LRR | PGSC0003DMT400015439 | −7.07 | – | Leucine-rich repeat/extensin |
cell wall.cell wall proteins.LRR | PGSC0003DMT400043527 | −6.26 | – | Leucine-rich repeat family protein / extensin family protein |
cell wall.cell wall proteins.RGP | PGSC0003DMT400039494 | −5.13 | – | GRP 2 |
cell wall.cell wall proteins.RGP | PGSC0003DMT400063316 | 3.38 | – | GRP 2 |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400008105 | −8.23 | – | Endo-1,4-beta-glucanase |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400009667 | −11.21 | – | Endo-1,4-beta-glucanase |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400012809 | −9.03 | 3.45 | Endo-beta-1,4-glucanase |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400015233 | −10.73 | – | Hydrolase, hydrolyzing O-glycosyl compounds |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400023082 | −4.55 | – | Endo-1,4-beta-glucanase |
cell wall.degradation.cellulases and beta −1,4-glucanases | PGSC0003DMT400032028 | −8.27 | – | Endo-beta-1,4-D-glucanase |
cell wall.degradation.mannan-xylose-arabinose-fucose | PGSC0003DMT400009055 | −19.24 | 3.03 | Endo-beta-mannanase |
cell wall.degradation.mannan-xylose-arabinose-fucose | PGSC0003DMT400012716 | −6.72 | – | Xylanase Xyn2 |
cell wall.degradation.mannan-xylose-arabinose-fucose | PGSC0003DMT400076470 | – | −1.92 | LEXYL2 protein |
cell wall.degradation.pectate lyases and polygalacturonases | PGSC0003DMT400001638 | −4.7 | – | Polygalacturonase |
cell wall.degradation.pectate lyases and polygalacturonases | PGSC0003DMT400027955 | −17.69 | – | Pectate lyase |
cell wall.degradation.pectate lyases and polygalacturonases | PGSC0003DMT400064881 | −24.45 | – | Dehydration-responsive protein RD22 |
cell wall.degradation.pectate lyases and polygalacturonases | PGSC0003DMT400076251 | −8.1 | −2.32 | Pectase lyase |
cell wall.degradation.pectate lyases and polygalacturonases | PGSC0003DMT400079602 | −32.82 | −3.43 | Polygalacturonase-1 non-catalytic subunit beta |
cell wall.pectin*esterases.PME | PGSC0003DMT400023725 | – | −2.94 | Pectinesterase 3 |
cell wall.pectin*esterases.PME | PGSC0003DMT400035577 | – | 1.71 | Pectinesterase |
cell wall.pectin*esterases.PME | PGSC0003DMT400016326 | −3.55 | – | Glutamyl-tRNA reductase |
cell wall.pectin*esterases. Acetyl esterase | PGSC0003DMT400062026 | −3.61 | – | PAE |