|  |  | HD+RNA |  |  | Sequence |  |  |  |
---|---|---|---|---|---|---|---|---|---|
Pheno | Chr | Mbp | QTL PVal | Tag Var | Var effect | QTL PVal | Tag Var | SNP effect | Validation |
LC | 1 | 154.14 | 4.98×10−12 | rs43280825 | −0.0143±0.0021 | 2.25×10−13 | rs43282035 | −0.0155±0.0021 | 3.09×10−24 |
LC | 2 | 127.64 | 3.93×10−13 | rs209230743 | −0.0160±0.0022 | 1.37×10−13 | rs208702482 | −0.0164±0.0022 | 2.84×10−19 |
LC | 3 | 15.52 | 2.25×10−14 | rs210326427 | −0.0136±0.0018 | 1.26×10−14 | rs211336034 | −0.0137±0.0018 | 3.82×10−22 |
LC | 3 | 53.84 | 7.86×10−16 | rs136784524 | −0.0152±0.0019 | 6.02×10−16 | rs109613143 | −0.0153±0.0019 | 3.52×10−23 |
LC | 5 | 21.14 | 7.55×10−12 | rs133198838 | 0.0128±0.0019 | 3.46×10−12 | rs377953581 | 0.0130±0.0019 | 0.210 |
LC | 5 | 31.56 | 4.18×10−13 | rs109681546 | 0.0138±0.0019 | 1.40×10−14 | rs137534989 | −0.0140±0.0018 | 6.90×10−23 |
LC | 5 | 44.16 | 4.25×10−11 | rs378337086 | 0.0134±0.0020 | 3.51×10−11 | rs383349320 | 0.0134±0.0020 | 2.91×10−10 |
LC | 6 | 37.76 | 1 . 9 5 × 10−221 | rs381223633 | 0.2656±0.0084 | <1.05×10−308 | rs43702337 | −0.3379±0.0090 | <1.05×10−308 |
LC | 6 | 89.04 | 6 . 9 6 × 10−20 | rs110432804 | −0.0208±0.0023 | 1.25×10−20 | rs478177439 | −0.0213±0.0023 | 1.73×10−29 |
LC | 7 | 8.77 | 4.55×10−11 | rs137176653 | 0.0115±0.0017 | 5.92×10−11 | rs210686953 | 0.0120±0.0017 | 4.02×10−11 |
LC | 10 | 2.14 | 2.94×10−13 | rs137007518 | −0.0143±0.0020 | 2.63×10−13 | rs137774567 | −0.0145±0.0020 | 6.63×10−10 |
LC | 15 | 28.36 | 1 . 0 6 × 10−21 | rs209807357 | −0.0281±0.0029 | 2.70×10−21 | rs211369213 | −0.0278±0.0029 | 2.02×10−45 |
LC | 16 | 24.99 | 3 . 9 6 × 10−20 | rs109379517 | −0.0183±0.0020 | 1.25×10−21 | rs109379517 | −0.0192±0.0020 | 1.60×10−29 |
LC | 16 | 67.77 | 1.11×10−12 | rs137354702 | 0.0124±0.0017 | 1.11×10−12 | rs380467601 | 0.0128±0.0018 | 1.43×10−23 |
LC | 17 | 56.47 | 7.97×10−14 | rs109194382 | −0.0142±0.0019 | 7.40×10−14 | rs134672113 | −0.0142±0.0019 | 8.35×10−07 |
LC | 19 | 33.51 | 5.19×10−15 | rs109898712 | −0.0149±0.0019 | 1.01×10−15 | rs109514832 | −0.0149±0.0019 | 2.14×10−38 |
LC | 19 | 42.99 | 9.38×10−14 | rs133057731 | 0.0233±0.0031 | 6.85×10−14 | rs517084099 | 0.0248±0.0033 | 8.68×10−31 |
LC | 19 | 61.13 | 1 . 2 3 × 10−24 | rs41923843 | −0.0187±0.0018 | 1.23×10−24 | rs41923843 | −0.0187±0.0018 | 1.63×10−34 |
LC | 20 | 58.45 | 2 . 0 1 × 10−18 | rs135594014 | −0.0175±0.0020 | 9.37×10−19 | rs135934727 | −0.0178±0.0020 | 1.34×10−27 |
LC | 27 | 36.21 | 2 . 8 4 × 10−22 | rs208675276 | 0.0173±0.0018 | 2.34×10−22 | rs209987511 | 0.0175±0.0018 | 2.71×10−41 |
LC | 28 | 6.56 | 5.47×10−13 | rs110674951 | 0.0133±0.0019 | 5.47×10−13 | rs110674951 | −0.0138±0.0019 | 3.90×10−35 |
LC | 29 | 9.61 | 4 . 0 3 × 10−35 | rs471922429 | 0.0252±0.0020 | 5.96×10−36 | rs378183369 | 0.0245±0.0020 | 2.32×10−90 |
LY | 5 | 93.94 | 8 . 5 4 × 10−19 | rs134637616 | 0.0175±0.0020 | 4.35×10−22 | rs211210569 | 0.0183±0.0019 | 1.09×10−26 |
LY | 11 | 63.45 | 7.94×10−12 | rs210726760 | 0.0133±0.0019 | 2.65×10−11 | rs210726760 | 0.0130±0.0019 | 3.60×10−9 |
LY | 14 | 1.77 | 2 . 0 0 × 10−138 | rs134364612 | −0.0421±0.0017 | 1.09×10−137 | rs109234250 | −0.0420±0.0017 | 9.43×10−179 |
LY | 20 | 31.69 | 7.18×10−12 | rs110728486 | −0.0114±0.0017 | 6.54×10−12 | rs208881195 | −0.0114±0.0017 | 7.52×10−9 |
LY | 26 | 22.96 | 4.06×10−15 | rs110996268 | 0.0150±0.0019 | 1.30×10−15 | rs208730573 | 0.0152±0.0019 | 1.50×10−6 |