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Table 1 Differentially expressed genes detected in the samples divergent for meat tenderness

From: Differences in global gene expression in muscle tissue of Nellore cattle with divergent meat tenderness

Gene

Locus

Tender

Tough

log2 (fold change)a

p-value

q-value

XLOC_002455

10:2,270,299–2,271,226

213.386

0.108797

429.375

0.0001

0.0078

XLOC_014455

21:61,587,088–61,588,096

194.026

0.110438

413.493

0.0001

0.0078

XLOC_002491

10:20,795,303–20,795,839

49.187

0.291183

407.828

0.0001

0.0078

IQCG

1:70,792,451–70,838,105

0.975199

0.0683124

383.548

0.0001

0.0078

CLEC4G

7:17,785,971–17,789,026

213.916

0.152397

381.114

0.0002

0.0251

EXOSC2

11:101,010,350–101,010,501

146.306

109.334

374.217

0.0001

0.0078

DMGDH

10:9,994,009–10,066,954

0.700546

0.0710559

330.145

0.0001

0.0078

XLOC_029184

GJ060137.1:2576–3597

194.018

0.224785

310.957

0.0001

0.0078

CLDN19

3:104,091,609–104,096,449

112.997

0.133369

308.279

0.0001

0.0078

XLOC_006476

14:27,940,730–27,941,920

173.549

0.233603

289.322

0.0001

0.0078

USP32

19:13,087,794–13,088,565

293.099

0.401415

286.822

0.0001

0.0078

CTNNB1

22:13,897,328–13,898,816

129.849

0.179967

285.103

0.0001

0.0078

AT2

X:1,024,840–1,027,901

112.057

0.163197

277.955

0.0001

0.0078

XLOC_022848

4:115,985,386–115,986,391

206.906

0.302608

277.346

0.0001

0.0078

XLOC_028948

9:32,650,968–32,653,108

0.903283

0.135688

273.489

0.0001

0.0078

CLEC12A

5:100,388,588–100,401,353

205.909

0.31943

268.844

0.0001

0.0078

XLOC_024373

5:47,857,813–47,858,488

368.063

0.591044

263.861

0.0001

0.0078

ZKSCAN2

25:23,091,496–23,104,117

0.689172

0.130967

239.566

0.0001

0.0078

XLOC_022865

4:119,488,532–119,490,812

0.857893

0.171544

232.222

0.0001

0.0078

XLOC_022836

4:114,608,102–114,609,417

166.248

0.334759

231.214

0.0001

0.0078

SYP

X:92,308,615–92,320,415

0.814972

0.169198

226.804

0.0001

0.0078

XLOC_029021

9:76,153,645–76,154,023

105.826

23.362

217.945

0.0001

0.0078

XLOC_002519

10:28,447,880–28,449,134

173.421

0.402111

210.862

0.0001

0.0136

XLOC_021066

3:20,773,659–20,775,848

100.205

0.252969

198.593

0.0001

0.0078

XLOC_001046

1:150,301,045–150,303,606

0.781722

0.211096

188.876

0.0001

0.0136

ASAH1

27:18,312,322–18,314,792

0.924241

0.265766

179.811

0.0001

0.0136

XLOC_018808

28:17,838,746–17,847,124

120.255

0.353753

176.528

0.0001

0.0136

XLOC_001185

1:91,928,092–91,930,927

0.775044

0.232207

173.887

0.0001

0.0078

TCF7L1

11:49,714,024–49,715,693

931.924

299.392

163.818

0.0001

0.0078

XLOC_022736

4:59,964,007–59,966,831

0.820647

0.270615

160.052

0.0002

0.0198

XLOC_001280

1:151,442,513–151,443,449

221.613

0.163023

37.649

0.0001

0.0078

ENSBTAG00000022947

21:21,965,065–21,966,315

156.027

0.257492

25.992

0.0001

0.0078

LOC511981

14:58,850,047–58,851,086

300.014

108.315

14.698

0.0001

0.0136

PCP4L1

3:8,249,980–8,276,724

179.755

0.413335

2.120

0.0001

0.0078

BoLA-DQB

23:25,855,145–25,863,052

122.213

682.692

−0.840093

0.0001

0.0078

HMOX1

5:73,980,699–73,987,841

115.512

197.874

−0.776539

0.0002

0.0251

PNP

6:87,555,287–87,556,157

163.788

543.206

−159.226

0.0001

0.0078

XLOC_004829

13:42,396,473–42,396,753

241.093

676.471

−183.349

0.0001

0.0078

XLOC_029070

9:102,893,791–102,894,054

21.503

101.088

−441.086

0.0001

0.0078

  1. Symbol of the differentially expressed gene (Gene), location of the gene in the Bos taurus genome, FPKM values obtained for tender and tough meat, relative expression (log2 fold change), p-value, and q-value
  2. aThe fold-change estimates (relative expression) refer to the tender meat group