Construction of Pará rubber tree genome and multi-transcriptome database accelerates rubber researches

BMC Genomics

Table 1 Data source and number of annotated genes of each database or experiment

Category	Contents	Number of annotated rubber genes	URL of the data source	Reference
Genome and proteins	Draft genome	84,443	http://matsui-lab.riken.jp/rubber/	[4]
Functional annotation	KEGG	61,453	http://www.genome.jp/	[15]
	NCBI Protein	64,585	https://www.ncbi.nlm.nih.gov/protein/	[16]
	Swiss-Prot	33,553	http://www.uniprot.org/uniprot/	[17]
	TrEMBLE	63,053	http://www.uniprot.org/uniprot/	[17]
	GO	35,247	http://www.geneontology.org/	[18]
Transcriptome	FL-cDNA	7704	http://matsui-lab.riken.jp/rubber/	[10]
	RNA-seq	42,614		[10] [23]
	CAGE	21,168		[4]
	ESTs	23,790^a	http://www4a.biotec.or.th/rubber/ http://scarecrow.fmrp.usp.br/heveabr/	[19,20,21]
	Iso-Seq	17,668	http://www4a.biotec.or.th/rubber/	[11]

^aNumber of annotated rubber genes was calculated using three EST data sources and our original FL-cDNA

ISSN: 1471-2164