Table 1 Description of Chlamydia gallinacea JX-1 genome

Clinical manifestation and anatomical site sample type

Asymptomatic/Cloacal swab

Host and country of origin

Chicken, China

Total No. of filtered reads

66,564

Average read length

11,688 bp

Average read depth

100 ×

Genome size (bp) and % GC

1,059,522 bp / 37.93% GC

No. of predicted CDSs

957

Chlamydial plasmid and size

Present: pJX-1 (7.49 Kbp)

nc RNAs

39 tRNAs, two 5S rRNA, and single copy of 16S rRNA and 23S rRNA

Pyrimidine genes

Present (pyrG, pyrE, pyrH, ndk)

Biotin operon

Present (bioADFB, bioY)

Tryptophan operon

Absent

% DNA sequence identity C. gallinacea 08-1274/3

99.4%

Accession number

CP019792