Table 2 Sequence analysis of C. gallinacea polymorphic genes
Locus tag and length (bp) in C. gallinacea JX-1 | Predicted product | % DNA sequence similarity | Total No. of polymorphisms | No. of non-synonymous substitutions | No. of synonymous substitutions |
|---|---|---|---|---|---|
GM000925 (1581Â bp) | Lysine-tRNA ligase | 95.1% | 77 SNPs | 11 | 65 |
GM000895 (873Â bp) | Serine/threonine protein phosphatase | 93.2% | 59 SNPs | 12 | 53 |
GM000890 (2631Â bp) | Alanyl-tRNA synthetase | 92.5% | 198 SNPs | 36 | 162 |
GM000889 (3252Â bp) | Transcription-repair coupling factor | 94.2% | 190 SNPs | 37 | 153 |
GM000888 (924Â bp) | Uroporphyrinogen decarboxylase (hemE) | 92.2% | 72 SNPs | 9 | 63 |
GM000887 (1374Â bp) | Coproporphyrinogen oxidase (hemN) | 93.0% | 96 SNPs | 31 | 65 |
GM000705 (1206Â bp) | Major outer membrane protein, porin | 86.7% | 161 (104 SNPs and 57 indel) | 38 | 60 |
GM000539 (1356Â bp) | Sodium/alanine symporter family protein | 95.2% | 65 SNPs | 12 | 53 |
GM000349 (1236Â bp) | Cell wall hydrolase | 91.7% | 102 (87 SNPs and 15 indel) | 41 | 45 |
GM000348 (1179Â bp) | Phage T7 tail fiber family protein | 80.3% | 232 (133 SNPs and 99 indel) | 59 | 74 |
GM000289 (2409Â bp) | Glycogen phosphorylase | 94.1% | 142 SNPs | 20 | 122 |
GM000288 (1290Â bp) | Dihydrolipoamide acetyltransferase component | 91.1% | 115 SNPs | 40 | 75 |
GM000264a (1765Â bp) | Hypothetical protein | 88.3% | 202 (175 SNPs and 27 indel) | 67 | 108 |