Table 1 The quality control of the clean data
Sample | Num. of Reads | Raw Clean Reads % | Remove Adapter% | Insert Null % | N % | Too short % | Poly-A % | Too long % | Low quality % |
|---|---|---|---|---|---|---|---|---|---|
CK1 | 23,619,871 | 76.50% | 0.06% | 2.18% | 0.17% | 13.86% | 0.06% | 7.04% | 0.12% |
CK2 | 25,100,163 | 68.65% | 0.09% | 1.27% | 0.16% | 24.63% | 0.05% | 5.05% | 0.11% |
CK3 | 25,399,547 | 67.22% | 0.09% | 1.34% | 0.16% | 29.78% | 0.04% | 1.25% | 0.11% |
T1 | 25,154,335 | 74.96% | 0.07% | 2.16% | 0.17% | 15.86% | 0.06% | 6.60% | 0.11% |
T2 | 26,168,148 | 75.67% | 0.10% | 0.65% | 0.18% | 14.36% | 0.05% | 8.88% | 0.11% |
T3 | 24,800,764 | 70.92% | 0.11% | 0.64% | 0.16% | 21.37% | 0.05% | 6.65% | 0.11% |