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Table 2 The comparison of fold change (from sequencing libraries) and expression levels (via qRT-PCR) of typical miRNAs

From: Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

 

MiRNA

Source

Target

Annotation

Sequencing(Fold-change)

qRT-PCR(Fold-change)

Down-regulation

miR159

Ptc [27],Ath,Pte [22]

MYB33

leaf development

–

–

Pp05–28,899-3p

Sequencing

  

0.47

–

miR395d

Sequencing, Ath [22],Ptc [27]

APS,AST68

sulfate translocation and assimilation.

0.5

80.75

miR7122b-5p

Sequencing

HOS

 

0.47

17.55

miR8133-3p

Sequencing

  

0.32

13.93

miR399a

Sequencing, Ath [22],Ptc [27]

UBC24

 

0.18

13.18

miR395e

Sequencing, Ath [22],Ptc [27]

APS,AST68

sulfate translocation and assimilation.

0.5

2.89

miR1511

Ppe [37]

 

unique

–

2.31

miR171c

Ath [52]

SCL

chlorophyll synthesis

–

2.31

miR399b

Sequencing

  

0.29

2.09

miR3627-3p

Ppe [58]

 

TCA, EMP

–

1.61

miR393a

Ath,Pte [22]

AFB2,TIR1, SCF

Antibacterial Resistance, abiotic stress tolerance

–

1.41

miR5072

Ppe [37]

 

alternative reference

–

1.25

miR166a

Ath,Pte [22]

HD-ZIP

abiotic stress tolerance

–

1.05

miR156a

Ath,Pte [22]

SPL

abiotic stress tolerance

–

1.05

Reference

miR5059*

Ppe [37]

 

reference*

–

1

Up-regulation

miR397

Sequencing

Laccase

 

2.42

1.07

miR160a

Ath,Pte [22]

ARF17

Leaf development

–

1.24

miR402

Ppe [37]

 

abiotic stress tolerance

–

1.28

miR319a

Ath [21]

 

flowing time

–

1.75

Pp03–19,842-3p

Sequencing

  

5.23

2.04

miR398a-3p

Ath,Pte [22]

CSD1,2

protection from oxidative stress

–

2.09

miR6260

Ppe [37]

 

unique

–

2.31

miR171d-3p

Sequencing

  

5.1

2.43

Pp03–22,312-5p

Sequencing

  

–

3.77

Pp03–22,312-3p

Sequencing

  

2.42

4.15

miR6263

Ppe [37]

 

unique

4.67

5.21

miR3627-5p

Sequencing

  

6.02

5.24

Pp06–35,148-3p

Sequencing

  

2.57

6.09

miR398a-5p

Ath,Pte [22]

CSD1,2

protection from oxidative stress

–

6.67

Pp06–35,148-5p

Sequencing

  

4.75

11.99

  1. Abbreviations: Ath Arabidopsis thaliana, Ptc Populus trichocarpa, Pte Populus tremula, Ppe Prunus persica