Alternative patterns of sex chromosome differentiation in Aedes aegypti (L)

BMC Genomics

Table 1 Polymorphisms and Coverage

	Aaa		SenAae
Monomorphic SNPs -Excluded	21,849,618		23,861,997
Number of variant sites	1,901,845		3,044,292
Coverage per nucleotide^a-	-Min	60		60
	-Max	3564		3745
	-Mean	180		261.4
	-Median	152		214
Allele frequency Statistics	Aaa		SenAae
	Female	Male	Female	Male
H_exp across all genes
Mean (95% cI)	0.097 +/− 0.084	0.098 +/− 0.084	0.113 +/− 0.090	0.112 +/− 0.089
Median	0.024	0.024	0.029	0.026
Mean sample variance	0.002	0.002	0.002	0.002
Standard deviation	0.043	0.043	0.046	0.046
Chr 1 H_exp
Mean (95% cI)	0.099 +/− 0.084	0.102 +/− 0.086	0.112 +/− 0.089	0.111 +/− 0.089
Median	0.025	0.027	0.031	0.027
Mean sample variance	0.002	0.002	0.002	0.002
Standard deviation	0.043	0.044	0.046	0.045
Increased male H_exp, T-test p value		2.20E-16		ns
M locus proximal region
Mean (95% cI)	0.074 +/− 0.074	0.082 +/- 0.078	0.082 +/− 0.078	0.081 +/− 0.034
Median	0.018	0.02	0.016	0.015
Mean sample variance	0.001	0.002	0.002	0.0003
Standard deviation	0.038	0.04	0.04	0.0176
Increased male H_exp, T-test p value		2.20E-16		ns

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