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Fig. 6 | BMC Genomics

Fig. 6

From: Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Fig. 6

Representation of associations and ASE-SNPs mapping to genes within the SLA region. SNPs detected as eQTL-SNPs by eGWAS are listed on the y-axis and their VEP annotation is indicated. These SNPs are ordered according to their physical position on SSC7, using the SusScrofa.10.2 genome assembly as a reference sequence. The genes listed along the x-axis are those that were found to harbor ASE-SNPs already referenced in dbSNP or that were associated with eQTL-SNPs by eGWAS. These genes are ordered using the map of the Hp1a.1 haplotype as a reference sequence [30]. All genes affected by ASE are indicated with red boxes and all distant associations are indicated with blue boxes. The centromere known to map between the class III and II sub-regions is shown. I = Intronic variant; IG = Intergenic variant; D = Downstream variant; U = Upstream variant; 3′ = 3’UTR variant; S = Synonymous variant; NCEx = Non-coding exonic variant; M = Missense variant

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BMC Genomics

ISSN: 1471-2164

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