Fig. 2

a RNAPII ChIP-seq index analysis. Exons of annotated protein coding genes (n = 25,246; left) and of the identified lincRNAs (n = 1068; right) were indexed according to their RNAPII ChIP-seq reads and plotted versus the read counts of RNAPII ChIP-seq, RNA-seq, polysomes RNA-seq, H3K4me2 ChIP-seq and H3K27me3 ChIP-seq, as indicated. Data are shown with a run-window averaging (see methods). Accession numbers of the H3K4me2 ChIP-seq and H3K27me3 ChIP-seq datasets are SRX550077 and SRX1818756, respectively. b Percentage of Neurospora protein-coding genes and lincRNA genes with homologies in Sordaria macrospora (S.m.), Chaetomium thermophilum (C.t.), Aspergillus niger (A.n.), Saccharomyces cerevisiae (S.c.) and Takifugu rubripes (T.r.). FASTA sequences of the 1478 lincRNA genes of Neurospora crassa were used for a discontiguous megablast (https://blast.ncbi.nlm.nih.gov) analysis. For control, 3 times 1478 protein-coding genes were randomly selected. The bars represent the percentage of input sequences that gave significant hits in each species, with + − SD for the control genes of the 3 measurement