Table 2 Correlations between quantitative real-time PCR with microarray expression for selected genes (n=22)
From: Time course study of the response to LPS targeting the pig immune gene networks
Gene name | Gene description | List that provided the gene | Pearson correlation | p-value (Fluidigm) | Gene expression profile |
|---|---|---|---|---|---|
CHI3L1 | chitinase 3 like 1 | (List 1) | 0.72 | 1.68e-07 | down at t=+1 |
up at t=+24 | |||||
CHIT1 | chitinase 1 | (List 1) | 0.68 | 0.00214 | down at t=+1 |
up at t=+24 | |||||
CLEC2D | C-type lectin domain family 2 member D | (List 2), (List 3) | 0.60 | 0.0019 | down at t=+1 |
up at t=+24 | |||||
GALK2 | galactokinase 2 | (List 1) | 0.50 | 9.52e-11 | down at t=+1 |
up at t=+24 | |||||
HSD17B11 | hydroxysteroid (17-beta) | (List 1) | 0.67 | 3.02e-11 | down at t=+1 |
dehydrogenase 11 | up at t=+24 | ||||
KAT5 | lysine acetyltransferase 5 | (List 1) | 0.53 | 5.37e-09 | down at t=+1 |
up at t=+24 | |||||
LCK | LCK proto-oncogene, Src family | (List 1) | 0.74 | 3.77e-10 | down at t=+1 |
tyrosine kinase | up at t=+24 | ||||
MSN | moesin | (List 1) | 0.61 | 5.68e-05 | down at t=+1 |
up at t=+24 | |||||
MYLIP | myosin regulatory light chain | (List 1) | 0.72 | 2.26e-10 | down at t=+1 |
interacting protein | up at t=+24 | ||||
RAB31 | RAB31, member RAS oncogene family | (List 1) | 0.65 | 0.00152 | down at t=+1 |
up at t=+24 | |||||
RARA | retinoic acid receptor alpha | (List 1) | 0.58 | 6.59e-05 | down at t=+1 |
up at t=+24 | |||||
SSH1 | slingshot protein phosphatase 1 | (List 1), (List 2) | 0.67 | 1.28e-11 | down at t=+1 |
(List 3) | up at t=+24 | ||||
VAT1 | vesicle amine transport 1 | (List 1) | 0.75 | 1.26e-12 | down at t=+1 |
up at t=+24 | |||||
VNN2 | vanin 2 | (List 1) | 0.52 | 0.74 | down at t=+1 |
up at t=+24 | |||||
CERS4 | ceramide synthase 4 | (List 2), (List 3) | 0.60 | 1.16e-06 | down at t=+1 |
up at t=+4 | |||||
FAS | Fas cell surface death receptor | (List 1), (List 2) | 0.83 | <2e-16 | down at t=+1 |
(List 3) | up at t=+4 | ||||
JAK2 | Janus kinase 2 | (List 2), (List 3) | 0.52 | 2.54e-10 | down at t=+1 |
up at t=+4 | |||||
ADAM10 | ADAM metallopeptidase domain 10 | (List 1) | 0.56 | 8.15e-05 | down at t=+4 |
up at t=+24 | |||||
ANXA7 | annexin A7 | (List 1) | 0.59 | 0.000417 | down at t=+4 |
up at t=+24 | |||||
COMT | catechol-O-methyltransferase | (List 1) | 0.75 | 1.64e-14 | down at t=+4 |
up at t=+24 | |||||
STMN1 | stathmin 1 | (List 1) | 0.69 | 3.24e-09 | down at t=+4 |
up at t=+24 | |||||
SOD2 | superoxide dismutase 2, | (List 1) | 0.74 | <2e-16 | up at t=+4 |
mitochondrial | down at t=+24 |