Table 1 Hot Spot of Differentially Expressed Genes
From: Pronounced strain-specific chemosensory receptor gene expression in the mouse vomeronasal organ
Chr | Start | End | Span (MB) | Expr. Genes | DE genes | % DE | Prominent Gene Families |
|---|---|---|---|---|---|---|---|
6 | 48,448,229 | 48,754,210 | 0.31 | 25 | 11 | 44% | GIMAP |
6 | 56,172,928 | 57,664,632 | 1.49 | 39 | 14 | 35.9% | Vmn1r (Clade C) |
6 | 89,316,314 | 90,600,203 | 1.28 | 46 | 19 | 41.3% | Vmn1r (Clades A, B) |
6 | 123,195,632 | 124,082,601 | 0.89 | 27 | 11 | 40.7% | Clec, Vmn2r (Clade B) |
6 | 128,648,576 | 129,740,484 | 1.09 | 62 | 28 | 45.2% | Clec, Klr |
6 | 136,506,167 | 138,079,916 | 1.57 | 30 | 12 | 40% | NA |
7 | 7,171,330 | 9,389,264 | 2.22 | 67 | 32 | 47.8% | Vmn2r (Clade A4) |
7 | 23,272,801 | 24,143,241 | 0.87 | 41 | 18 | 43.9 | Vmn1r (Clade D) |
7 | 104,140,623 | 104,601,779 | 0.46 | 32 | 13 | 40.6 | Olfr, Trim |
16 | 44,347,121 | 47,758,671 | 3.41 | 40 | 17 | 42.5 | Cd200, Cd200r |
17 | 17,830,352 | 20,405,756 | 2.58 | 44 | 19 | 43.2 | Fpr, Vmn2r (Clade A8) |
17 | 34,031,812 | 36,198,513 | 2.17 | 122 | 47 | 38.5 | Btnl, MHC (Clades IIa, IIb, Ia, Ib) |
Hot Spot Totals | 18.34 | 575 | 241 | 41.9% | Â | ||
Whole Genome | Â | 44,957 | 5745 | 12.8% | Â | ||