Skip to main content

Table 3 Mobile elements of strains DSM 27638 and DSM 27639a

From: Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile

Start

Stop

Length [bp]

ORFs

Mobile element and gene content

DSM 27638

 284,586

301,831

17,244

16

PHAGE (P1) (not found in 012 and 017 ribotypes)

 398,255

402,824

4569

7

ABC transporter, two-component system, transposase

 501,871

511,046

9229

10

transposase, hydrolases, transcriptional regulator, oligo-1,6-glucosidase, PTS system transporter subunit IIABC

 518,083

528,817

10,734

10

lantibiotic resistance, two two-component systems, ABC transporter

 662,517

674,897

12,380

11

ABC transporter, two-component system, transcriptional regulator

 934,705

938,946

4241

5

lantibiotic resistance two-component system, two-component system

 1,438,093

1,465,397

27,304

30

PHAGE (P2)

 1,680,933

1,736,907

55,974

69

PHAGE (P3) (ribotype 027 specific)

 2,046,513

2,066,289

19,776

6

PHAGE (P4) (ribotype 027 specific)

 3,441,029

3,447,002

5973

6

conjugative transposon

 3,478,606

3,491,098

12,492

8

integrase, chromosome segregation ATPase

 3,489,961

3,527,152

37,191

26

PHAGE (P5) (ribotype 027 specific)

 3,769,213

3,775,340

6127

7

conjugative transposon

 3,775,480

3,844,734

69,254

54

PHAGE (P6) (DSM 27638 specific)

 3,846,878

3,869,593

22,715

22

conjugative transposon

 4,100,257

4,105,353

5096

5

ABC transporter, two-component system

 4,134,037

4,164,119

30,082

34

conjugative transposon, multidrug resistance protein (ribotype 027 specific)

DSM 27639

 1,170,734

1,205,103

34,369

33

conjugative transposon, lantibiotic ABC transporter (DSM 27639 specific)

 1,461,445

1,488,797

27,352

30

PHAGE (P1)

 1,578,539

1,595,263

16,724

17

conjugative transposon (DSM 27639 specific)

 1,580,053

1,595,960

15,907

9

PHAGE (P2) (DSM 27639 specific)

 2,047,626

2,068,044

20,418

7

PHAGE (P3) (ribotype 012 specific)

 2,083,042

2,091,718

8676

9

PHAGE (P4)

 2,263,687

2,285,988

22,301

26

conjugative transposon (DSM 27639 specific)

 2,267,275

2,285,716

18,441

11

PHAGE (P5) (DSM 27639 specific)

 2,536,302

2,550,493

14,191

23

PHAGE (P6) (ribotype 012 specific)

 3,282,029

3,362,995

80,966

84

PHAGE (P7) (DSM 27639 specific)

  1. aDSM 27,640 is not included because it is identical to DSM 27638 in all elements. All mobile elements have been predicted by IslandViewer 3, PHASTER and have been manually curated