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Table 1 AtLBR-2-dependent up-regulated 65 genes after pLPS treatment

From: Transcriptome analysis reveals key roles of AtLBR-2 in LPS-induced defense responses in plants

Accession

Description

Log2FC

Ref.

AT2G14610

Pathogenesis-related protein 1 (PR1)*

−5.493297

[43]

AT3G23120

Receptor like protein 38 (RLP38)*

−4.553003

[44]

AT3G21500

1-deoxy-D-xylulose 5-phosphate synthase 1 (DXPS1)

−4.454822

AT2G30770

Putative cytochrome P450 (CYP71A13)*

−3.876201

[17]

AT1G61800

Glucose-6-phosphate/phosphate transporter 2 (GPT2)*

−3.440655

[45, 46]

AT1G21320

Nucleotide binding protein

−3.423526

AT2G14560

Late upregulated in response to Hyaloperonospora parasitica 1 (LURP1)*

−3.420434

[47]

AT4G35180

LYS/HIS transporter 7 (LHT7)*

−3.326263

[44, 46]

AT2G29350

Senescence-associated gene 13 (SAG13)*

−3.152003

[48]

AT4G04510

Cysteine-rich receptor-like kinase (RLK) 38 (CRK38)*

−3.124063

[49]

AT2G24850

Tyrosine aminotransferase 3 (TAT3)*

−2.935669

[10]

AT2G18660

Plant natriuretic peptide A (PNP-A)*

−2.824188

[50]

AT5G24200

Alpha/beta-Hydrolases superfamily protein*

−2.675765

[51]

AT2G04070

Multidrug and Toxin Extrusion (MATE) efflux family protein

−2.651088

AT3G22235

Pathogen and circadian controlled 1 (PCC1)

−2.612637

AT4G12470

Azelaic acid induced 1 (AZI1)*

−2.593354

[52]

AT1G33960

avrRpt2-induced gene 1 (AIG1)*

−2.454032

[53]

AT1G65500

Uncharacterized protein

−2.423526

[45]

AT4G22470

Lipid transfer protein (LTP) family protein*

−2.414268

[54]

AT4G12490

Lipid transfer protein*

−2.37707

[55]

AT4G12480

Early Arabidopsis aluminum induced 1 (pEARLI 1)*

−2.334243

[56]

AT5G46050

Peptide transporter 3 (PTR3)*

−2.322650

[57]

AT3G28580

P-loop containing nucleoside triphosphate hydrolases superfamily protein

−2.314015

AT3G50480

Homolog of RPW8 4 (HR4)*

−2.311148

[10]

AT2G26400

Acireductone dioxygenase 3 (ARD3)

−2.302582

AT1G51820

Leucine-rich repeat protein kinase family protein*

−2.288417

[32]

AT1G02920

Glutathione S-transferase 7 (GSTF7)*

−2.267427

[58]

AT1G65481

Uncharacterized protein

−2.255667

AT1G43910

P-loop containing nucleoside triphosphate hydrolases superfamily protein*

−2.252226

[44]

AT4G17660

Protein kinase superfamily protein

−2.126580

AT4G26200

1-Amino-cyclopropane-1-carboxylate synthase (ACS7)

−2.091110

AT3G63380

Auto-inhibited Ca2+-ATPase 12 (ACA12)*

−2.063108

[24, 44]

AT5G09470

Dicarboxylate carriers 3 (DIC3)

−2.058293

AT4G12735

Uncharacterized protein

−2.022097

AT2G25470

Receptor like protein 21 (RLP21)

−2.002310

AT3G26210

Putative cytochrome P450 (CYP71B23)

−1.987360

AT4G23130

Cysteine-rich RLK 5 (CRK5)*

−1.985073

[59]

AT2G25510

Uncharacterized protein*

−1.984502

[10]

AT5G03350

Legume lectin family protein*

−1.980512

[10]

AT3G50770

Calmodulin-like 41 (CLM41)*

−1.936221

[55]

AT4G37990

Elicitor-activated gene 3–2 (ELI3–2)*

−1.895395

[60]

AT4G00170

Plant vesicle-associated membrane protein (VAMP) family protein

−1.809448

AT2G19190

Flg22-induced RLK 1 (FRK1)*

−1.804904

[61]

AT2G20720

Pentatricopeptide repeat (PPR) superfamily protein

−1.790359

AT5G44390

FAD-binding Berberine family protein

−1.785875

AT1G35230

Arabinogalactan-protein 5 (AGP5)*

−1.779422

[62]

AT5G53870

Early nodulin-like protein 1 (ENODL1)

−1.774478

AT2G04050

Multidrug and Toxin Extrusion (MATE) efflux family protein

−1.766112

AT1G02930

Glutathione S-transferase 6 (GSTF6)*

−1.750494

[63]

AT2G43620

Chitinase family protein*

−1.717382

[64]

AT1G21250

Cell wall-associated kinase 1 (WAK1)*

−1.706512

[10, 65]

AT1G80130

Tetratricopeptide repeat (TPR)-like superfamily protein*

−1.679920

[66]

AT5G44575

Uncharacterized protein

−1.671623

AT5G62480

Glutathione S-transferase TAU 9 (GSTU9)

−1.630394

AT5G10760

Apoplastic, EDS1-dependent 1 (AED1)*

−1.621488

[50]

AT5G24640

Uncharacterized protein

−1.616614

AT5G64000

3′(2′),5′-bisphosphate nucleotidase (SAL2)

−1.600337

AT3G28540

P-loop containing nucleoside triphosphate hydrolases superfamily protein

−1.584674

AT1G05730

Uncharacterized protein (DUF842)

−1.542038

AT1G26420

FAD-binding Berberine family protein

−1.526992

[67]

AT1G67520

Lectin protein kinase family protein

−1.478748

AT2G26440

Pectin methylesterase 12 (PME12)*

−1.460767

[68]

AT3G26830

Phytoalexin deficient 3 (PAD3)*

−1.409278

[16, 69]

AT2G41730

Uncharacterized protein

−1.405069

AT1G15520

Pleiotropic drug resistance 12 (PDR12)*

−1.361787

[70]

  1. Genes up-regulated in an AtLBR-2-dependent manner after 24 h pLPS treatment were identified (FDR < 0.01, Log2FC < −1.35). Genes, which were related to plant–pathogen interaction or to SA, are indicated by asterisks or in bold type, respectively, with references