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Table 4 Distribution of the genes that conform the two-component systems in S. pneumoniae

From: The variome of pneumococcal virulence factors and regulators

Two-Component Systems (TCSs)

TIGR4

D39

R6

70,585

Hungary19A 6

SPN994038

SPN994039

SPN034183

OXC141

SPN034156

ST556

Taiwan19F-14

TCH8431/19A

A026

INV200

CGSP14

INV104

G54

AP200

P1031

gamPNI0373

SPNA45

ATCC 700669

JJA

670-6B

Histidine Kinases (HKs)

hk01

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk02

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk03

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk04

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk05

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk06

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk07

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

0

1

1

1

1

1

1

1

1

1

hk08

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk09

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk10

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk11

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

hk12

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

0

1

1

1

1

0

1

1

1

hk13

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

Response Regulators (RRs)

rr01

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr02

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr03

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr04

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr05

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr06

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr07

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

0

1

1

1

1

1

1

1

1

1

rr08

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr09

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr10

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr11

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr12

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

0

1

1

1

1

rr13

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

rr14

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

2

1

1

1

  1. The table shows, the absence (0) or presence (1 or 2) of each gene considered in the 25 strains selected for this study. The number (1 or 2) indicates the amount of copies per gene in each genome. rr14 is the only gene with more than one copy per genome (2), which is actually fused with its neighbor gene (gnd) upstream. In bold and italics, three genes are observed (hk01, hk12 and rr04) in two different strains which might have some alteration (insertion or deletion) in their primary DNA and protein Sequence. The two-component system NisK-NisR of the pneumococcus is rare, of the 25 strains analyzed in this study only in the strain 70,585 was found