Table 2 Assembly statistics for the Atlantic salmon, brown trout, Arctic charr and European whitefish de novo transcriptome assemblies
Feature | Atlantic salmon | Brown trout | Arctic charr | European whitefish |
|---|---|---|---|---|
Number of base pairs in cleaned reads | 64,909,254,125 | 67,282,460,986 | 65,841,176,651 | 73,342,359,278 |
Number of paired-end reads | 191,977,874 | 190,239,319 | 180,232,708 | 209,578,198 |
Number of base pairs in initial assembly | 182,476,550 | 179,378,175 | 156,753,048 | 162,053,186 |
Number of transcripts in initial assembly | 235,515 | 242,899 | 200,760 | 209,920 |
Number of base pairs in final assembly | 73,403,213 | 69,587,826 | 64,848,138 | 63,007,687 |
Number of transcripts in final assembly | 36,505 | 35,736 | 33,126 | 33,697 |
Average transcript length (bp) | 2011 | 1947 | 1957 | 1902 |
Minimum transcript length (bp) | 297 | 297 | 297 | 298 |
Maximum transcript length (bp) | 17,114 | 15,967 | 15,742 | 15,887 |
N50 | 2464 | 2393 | 2411 | 2325 |
N90 | 1115 | 1080 | 1087 | 1062 |