Skip to main content

Table 4 Top 3 transcripts for the top modules for each trait

From: Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

Trait Module Top 3 Transcripts (description) (GSa, MMb)
Line Blue ENSGALT00000052188 (lincRNA)
ENSGALT00000087010 (protein coding)
ENSGALT00000066798 (lincRNA)
(0.976, 0.964)
(0.976, 0.966)
(0.974, 0.962)
cDPI Darkturquoise RNF208 (Ring finger protein 208)
LAMA2 (Laminin subunit alpha 2)
LCK (LCK proto-oncogene, Src family tyrosine kinase)
(0.644, 0.753)
(−0.644, −0.562)
(0.643, 0.74)
Treatment Black cNFI-A (Nuclear factor 1 C-type)
RHOT2 (Ras homolog family member T2)
UBE2E3 (Ubiquitin conjugating enzyme E2 E3)
(−0.671, 0.694)
(0.61, −0.827)
(−0.576, 0.812)
Sex Lightyellow ENSGALT00000077789 (Nipped-B homolog-like)
ENSGALT00000085229 (lincRNA)
ENSGALT00000080994 (protein coding)
(−0.987, −0.937)
(−0.985, −0.94)
(−0.984, −0.964)
2 dpi viral load Black cNFI-A (Nuclear factor 1 C-type)
RHOT2 (Ras homolog family member T2)
CDC5L (Cell division cycle 5 like)
(−0.648, 0.694)
(0.596, −0.827)
(−0.586, 0.681)
6 dpi viral load Skyblue FAM98B (Family with sequence similarity 98 member B)
FUT8 (Alpha-(1,6)-fucosyltransferase)
ATP6V1H (V-type proton ATPase subunit H)
(−0.609, 0.777)
(−0.605, 0.87)
(−0.592, 0.849)
10 dpi antibody level Darkred ENSGALT00000068419 (protein coding)
FSTL1 (Follistatin like 1)
NOV (Nephroblastoma overexpressed)
(−0.754, 0.895)
(−0.729, 0.844)
(−0.719, 0.794)
  1. aGene Significance (GS)
  2. bModule Membership (MM)
  3. cDays post infection (DPI)