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Table 2 The number of predicted genes in 11 gene families for 21 defense-related traits in Arabidopsis

From: Inferring defense-related gene families in Arabidopsis and wheat

Phenotypea ABC Cupin Kinase NLR P450 Peroxidase Protease START TPRb TFc Transporter Total
AvrPphB 4 9 2 1 9 1 1 2 5 6 0 40
AvrRpm1 1 8 1 1 12 0 0 4 14 5 2 48
AvrB 1 8 1 1 12 0 0 4 14 6 2 49
AvrRpt2 0 0 0 0 1 0 0 0 1 0 1 3
DC3000 14 16 3 5 32 1 0 8 28 24 7 138
LP23.1a 13 22 0 5 18 1 0 2 19 11 4 95
RMX23.1a 40 44 4 28 92 1 1 19 89 34 20 372
RMX3.1b 8 4 0 0 6 3 1 2 5 5 1 35
PNA3.3a 4 5 0 3 9 1 0 2 8 3 2 37
ME3.1b 65 79 8 39 126 14 8 36 162 54 36 627
LP23.1a CFU2 26 37 0 21 76 12 7 20 99 38 20 356
RMX23.1a CFU2 65 81 8 50 148 13 9 37 161 68 38 678
RMX3.1b CFU2 20 37 3 14 39 5 2 11 54 30 15 230
PNA3.3a CFU2 44 48 6 16 72 5 3 22 83 33 23 355
ME3.1b CFU2 11 15 1 8 21 1 1 3 16 5 1 83
Emco5 1 1 1 0 0 0 1 0 0 2 1 7
Emwa1 3 4 1 1 3 0 1 3 6 5 3 30
Emoy2 2 1 0 0 3 0 0 2 2 2 2 14
Hiks1 3 4 1 2 6 0 0 3 8 4 4 35
Noco2 1 2 0 1 5 0 0 2 5 2 0 18
Aphid number 10 6 0 5 4 0 0 1 8 4 1 39
  1. a See Additional file 2 for detailed description of 21 defense-related phenotypes
  2. bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
  3. c TPR, Tetratricopeptide repeat superfamily