Inferring defense-related gene families in Arabidopsis and wheat

BMC Genomics

Table 3 The total number of SNPs in coding and non-coding regions of predicted genes in 11 gene families for 21 defense-related traits in Arabidopsis

Phenotype^a	ABC	Cupin	Kinase	NLR	P450	Peroxidase	Protease	START	TPR^b	TF^c	Transporter	Total
AvrPphB	1948	868	4004	3253	1001	70	614	285	3000	1423	1169	17,635
AvrRpm1	3635	1223	6539	5513	1493	331	313	207	4638	1687	1549	27,128
AvrB	1839	357	4331	3170	1048	70	551	285	2722	1351	886	16,610
AvrRpt2	2153	304	3915	2021	911	191	211	267	2190	559	698	13,420
DC3000	5325	2430	9775	7387	1532	601	643	400	7559	3113	2751	41,516
LP23.1a	4860	1908	8221	5641	1598	260	444	196	8295	3200	2155	36,778
RMX23.1a	5538	2918	11,130	7288	2586	882	711	309	9425	3857	1908	46,552
RMX3.1b	7567	3850	17,546	11,375	3990	979	1159	696	13,631	5451	4076	70,320
PNA3.3a	4989	1546	6907	5570	920	308	278	373	5271	2309	1276	29,747
ME3.1b	4653	1634	8436	5870	1926	321	673	76	4884	2038	1899	32,410
LP23.1a CFU2	6753	3214	13,341	8767	3201	880	786	487	10,726	4414	3203	55,772
RMX23.1a CFU2	6844	2944	13,110	8242	1925	440	864	570	9789	3679	2514	50,921
RMX3.1b CFU2	7605	4194	18,400	11,286	3755	1019	1159	534	14,364	5946	4139	72,401
PNA3.3a CFU2	5133	2083	8710	6282	2163	533	405	195	5865	2762	1673	35,804
ME3.1b CFU2	5460	2381	10,892	7700	2228	489	706	423	8447	3650	2623	44,999
Emco5	1872	859	3848	2084	571	133	202	345	2721	945	494	14,074
Emwa1	1117	586	2910	2355	452	0	313	138	1515	715	978	11,079
Emoy2	2267	586	3615	4376	1085	114	464	234	2435	1360	1049	17,585
Hiks1	2394	717	5451	4517	744	339	425	344	3614	1053	1193	20,791
Noco2	1610	386	2869	2948	798	82	202	57	1634	915	444	11,945
Aphid number	3471	1809	5839	4195	551	120	667	301	5456	1933	1688	26,030

^aSee Additional file 2 for detailed description of 21 defense-related phenotypes
^bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
^c TPR, Tetratricopeptide repeat superfamily

ISSN: 1471-2164