Skip to main content

Table 3 The total number of SNPs in coding and non-coding regions of predicted genes in 11 gene families for 21 defense-related traits in Arabidopsis

From: Inferring defense-related gene families in Arabidopsis and wheat

Phenotypea ABC Cupin Kinase NLR P450 Peroxidase Protease START TPRb TFc Transporter Total
AvrPphB 1948 868 4004 3253 1001 70 614 285 3000 1423 1169 17,635
AvrRpm1 3635 1223 6539 5513 1493 331 313 207 4638 1687 1549 27,128
AvrB 1839 357 4331 3170 1048 70 551 285 2722 1351 886 16,610
AvrRpt2 2153 304 3915 2021 911 191 211 267 2190 559 698 13,420
DC3000 5325 2430 9775 7387 1532 601 643 400 7559 3113 2751 41,516
LP23.1a 4860 1908 8221 5641 1598 260 444 196 8295 3200 2155 36,778
RMX23.1a 5538 2918 11,130 7288 2586 882 711 309 9425 3857 1908 46,552
RMX3.1b 7567 3850 17,546 11,375 3990 979 1159 696 13,631 5451 4076 70,320
PNA3.3a 4989 1546 6907 5570 920 308 278 373 5271 2309 1276 29,747
ME3.1b 4653 1634 8436 5870 1926 321 673 76 4884 2038 1899 32,410
LP23.1a CFU2 6753 3214 13,341 8767 3201 880 786 487 10,726 4414 3203 55,772
RMX23.1a CFU2 6844 2944 13,110 8242 1925 440 864 570 9789 3679 2514 50,921
RMX3.1b CFU2 7605 4194 18,400 11,286 3755 1019 1159 534 14,364 5946 4139 72,401
PNA3.3a CFU2 5133 2083 8710 6282 2163 533 405 195 5865 2762 1673 35,804
ME3.1b CFU2 5460 2381 10,892 7700 2228 489 706 423 8447 3650 2623 44,999
Emco5 1872 859 3848 2084 571 133 202 345 2721 945 494 14,074
Emwa1 1117 586 2910 2355 452 0 313 138 1515 715 978 11,079
Emoy2 2267 586 3615 4376 1085 114 464 234 2435 1360 1049 17,585
Hiks1 2394 717 5451 4517 744 339 425 344 3614 1053 1193 20,791
Noco2 1610 386 2869 2948 798 82 202 57 1634 915 444 11,945
Aphid number 3471 1809 5839 4195 551 120 667 301 5456 1933 1688 26,030
  1. aSee Additional file 2 for detailed description of 21 defense-related phenotypes
  2. bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
  3. c TPR, Tetratricopeptide repeat superfamily