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Table 4 The number of homologous SNPs in coding and non-coding regions of rust resistance genes for 11 gene families

From: Inferring defense-related gene families in Arabidopsis and wheat

Rust resistancea ABC Cupin Kinase NLR P450 Peroxidase Protease START TPRb TFc Transporter Total
Lr17a 0 0 0 4237 0 0 0 0 0 33,270 0 37,507
Lr21 0 0 0 2275 0 0 0 0 0 0 0 2275
Lr27 0 0 490,734 193,899 0 0 0 0 0 0 0 684,633
Lr34 32,659 0 0 0 0 0 0 0 0 0 0 32,659
Lr37 0 0 0 0 0 0 0 5530 0 0 0 5530
Lr46 0 2482 0 0 0 0 0 0 0 2417 0 4899
Lr60 606 0 0 90,923 0 0 0 0 0 0 0 91,529
Lr68 18,963 0 0 27,110 0 0 0 8943 0 15,209 0 70,225
QSr.abr- 70,003 0 0 29,571 108,568 0 0 0 0 0 0 208,142
Sr13 2169 0 0 3760 0 0 0 0 0 0 0 5929
Sr2 0 74,738 0 0 0 0 0 0 0 0 0 74,738
Sr22 0 0 1077 0 114,579 0 0 0 459,695 0 0 575,351
Sr26 4036 155,936 0 0 0 0 118,953 0 0 0 0 278,925
Sr35 0 0 3836 0 0 0 0 0 0 0 0 3836
Sr36 0 0 0 0 0 109,350 0 0 0 192,982 0 302,332
Sr39 0 0 63,540 0 0 0 0 0 1342 0 0 64,882
Sr43 93,131 0 0 12,242 0 0 0 0 0 0 0 105,373
Sr45 1647 0 0 0 0 0 0 0 0 5225 0 6872
Sr56 0 0 1923 0 0 0 0 0 0 4278 0 6201
Yr24 0 0 0 0 0 0 0 0 0 21,030 0 21,030
Yr26 0 0 0 0 0 0 0 0 0 0 110,296 110,296
Yr36 0 0 4957 0 0 0 0 0 0 0 0 4957
Yr53 0 0 4250 0 0 0 0 0 0 0 0 4250
GSId 0.698 0.450 0.247 0.640 0.500 0.000 0.000 0.472 0.006 0.481 0.000  
  1. aSome genes are known to confer resistance to multiple rusts and other pathogens and they include Lr34 (=Lr34/Yr18/Bdv1/Pm38/Ltn1), Lr37(=Lr37/Sr38/Yr17), Lr46(=Lr46/Yr29/Pm39/Ltn), Sr2(=Sr2/Lr27/PBC/Pm) and Sr39(=Sr39/Lr35)
  2. bTF, Transcription factor superfamily including bHLH, bZIP, Homeobox, MYB, WRKY
  3. c TPR, Tetratricopeptide repeat superfamily
  4. dGSI = Gini-Simpson diversity index