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Table 1 Bifidobacterium longum genomes sequenced and analysed in this study

From: Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Genomes

Source of Isolation

Contigs

No. of ORFs

Genome Size (bp)

GC content (%)

No. of unique genes

Plasmids (Rep+)

Reference

Subject

Age

Delivery

Feeding

B. longum APC 1461

A

27 w

CS

BM

37

1987

2,418,994

60.0

60

No

[49]

B. longum APC 1462

B

1 w

NB

BM

27

1992

2,417,784

60.2

4

Yes

[49]

B. longum APC 1464

B

1 w

NB

BM

31

1918

2,346,522

60.0

3

Yes

[49]

B. longum APC 1465

C

4 w

NB

BM

57

2032

2,452,211

59.6

6

Yes

[49]

B. longum APC 1466

C

27 w

NB

BM

51

2026

2,419,982

59.8

0

Yes

[49]

B. longum APC 1468

C

27 w

NB

BM

45

1994

2,395,158

60.1

12

Yes

[49]

B. longum APC 1472

E

1 w

CS

BM

50

1927

2,364,041

60.1

3

Yes

[49]

B. longum APC 1473

F

27 w

CS

BM

39

1874

2,317,071

59.8

6

No

[49]

B. longum APC 1476

G

27 w

NB

BM

48

2151

2,532,540

60.0

1

Yes

[49]

B. longum APC 1477

H

1 w

NB

BM

24

1761

2,228,807

59.8

0

No

[49]

B. longum APC 1478

H

4 w

NB

BM

21

1766

2,223,352

59.8

1

No

[49]

B. longum APC 1480

J

4 w

NB

BM

27

2084

2,477,750

59.9

6

No

[49]

B. longum APC 1482

D

1 w

NB

FM

72

1899

2,337,438

60.1

17

No

[49]

B. longum APC 1503

D

1 w

NB

FM

39

2189

2,562,703

59.7

23

No

[49]

B. longum APC 1504

I

1 w

NB

BM

51

1883

2,310,288

60.2

14

No

[49]

B. longum DPC 6316

K

25 y

ND

ND

32

1992

2,393,969

60.4

23

Yes

[50]

B. longum DPC 6317

L

3 d

ND

ND

20

1987

2,448,630

60.2

8

No

[50]

B. longum DPC 6320

M

64 y

ND

ND

25

1852

2,330,371

59.9

9

No

[50]

B. longum DPC 6321

N

3 d

ND

ND

28

1941

2,382,360

59.9

24

Yes

[50]

B. longum DPC 6323

O

4 d

ND

ND

52

1970

2,396,960

60.2

7

Yes

[50]

  1. w weeks, y years, d days, CS C-Section, NB natural birth, BM breast-milk, FM formula milk, ND not determined or unknown