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Table 1 Bifidobacterium longum genomes sequenced and analysed in this study

From: Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Genomes Source of Isolation Contigs No. of ORFs Genome Size (bp) GC content (%) No. of unique genes Plasmids (Rep+) Reference
Subject Age Delivery Feeding
B. longum APC 1461 A 27 w CS BM 37 1987 2,418,994 60.0 60 No [49]
B. longum APC 1462 B 1 w NB BM 27 1992 2,417,784 60.2 4 Yes [49]
B. longum APC 1464 B 1 w NB BM 31 1918 2,346,522 60.0 3 Yes [49]
B. longum APC 1465 C 4 w NB BM 57 2032 2,452,211 59.6 6 Yes [49]
B. longum APC 1466 C 27 w NB BM 51 2026 2,419,982 59.8 0 Yes [49]
B. longum APC 1468 C 27 w NB BM 45 1994 2,395,158 60.1 12 Yes [49]
B. longum APC 1472 E 1 w CS BM 50 1927 2,364,041 60.1 3 Yes [49]
B. longum APC 1473 F 27 w CS BM 39 1874 2,317,071 59.8 6 No [49]
B. longum APC 1476 G 27 w NB BM 48 2151 2,532,540 60.0 1 Yes [49]
B. longum APC 1477 H 1 w NB BM 24 1761 2,228,807 59.8 0 No [49]
B. longum APC 1478 H 4 w NB BM 21 1766 2,223,352 59.8 1 No [49]
B. longum APC 1480 J 4 w NB BM 27 2084 2,477,750 59.9 6 No [49]
B. longum APC 1482 D 1 w NB FM 72 1899 2,337,438 60.1 17 No [49]
B. longum APC 1503 D 1 w NB FM 39 2189 2,562,703 59.7 23 No [49]
B. longum APC 1504 I 1 w NB BM 51 1883 2,310,288 60.2 14 No [49]
B. longum DPC 6316 K 25 y ND ND 32 1992 2,393,969 60.4 23 Yes [50]
B. longum DPC 6317 L 3 d ND ND 20 1987 2,448,630 60.2 8 No [50]
B. longum DPC 6320 M 64 y ND ND 25 1852 2,330,371 59.9 9 No [50]
B. longum DPC 6321 N 3 d ND ND 28 1941 2,382,360 59.9 24 Yes [50]
B. longum DPC 6323 O 4 d ND ND 52 1970 2,396,960 60.2 7 Yes [50]
  1. w weeks, y years, d days, CS C-Section, NB natural birth, BM breast-milk, FM formula milk, ND not determined or unknown