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Table 1 Overview of imputation scenarios and number of reference and validation animals within scenario

From: Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle

Scenario

Reference

Validation

S1

49 animals out of Run 5

1528 animals out of Run 5

S2

20 BSW

103 BSW

S3

50 BSW

73 BSW

S4

20 random BSW

103 BSW

S5

103 BSW

20 random BSW from S4

S6

BSW + HOL + SIM (855 animals)

20 random BSW from S4

S7

All Run 5 animals (1557 animals)

20 random BSW from S4