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Table 2 Enriched hexamers exhibiting a footprint

From: Exploring the relationship between intron retention and chromatin accessibility in plants

Sample

IR Events

IE Events

 

5’ Exon

Intron

3’ Exon

5’ Exon

Intron

3’ Exon

Arabidopsis (leaf) [26]

12

6

100

0

28

0

Arabidopsis (flower) [26]

4

3

105

0

27

0

Rice (leaf) [27]

88

75

262

0

14

0

Rice (callus) [27]

46

32

192

0

30

0

  1. For each of the four datasets we provide the number of hexamers that exhibit a footprint and are also enriched in either IR or IE events. The number of enriched footprint-hexamers are shown in each of the three regions of an event: 5’ exon, intron and 3’ exon. An HMM score cutoff of S=0.30 was used to generate the footprint hexamers