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Table 3 Significant associations and corresponding QTLs detected by genome-wide association study and QTL mapping of leaf Cd concentration at seeding and maturing stage in maize

From: Genome-wide association analysis and QTL mapping reveal the genetic control of cadmium accumulation in maize leaf

No. Possible causative SNP Allelea MAF Position (bp) -log10(P) R2 (%) Candidate gene Function description Distance to Geneb
1 PZE-102118224 A/G 0.397 158,453,594 7.29 15.25 GRMZM2G455491 Cadmium/zinc-transporting ATPase 64.18 kb
GRMZM2G175576 Cadmium/zinc-transporting ATPase 42.64
2 SYN395 A/G 0.376 158,609,741 9.54 20.1 202.75 kb
3 SYN30994 A/C 0.387 160,798,026 7.99 16.74 GRMZM2G171370 ZIP transcription factor 158.95 kb
4 SYN30995 A/C 0.378 160,798,113 8.89 18.67 158.86 kb
5 SYN30993 A/C 0.352 160,957,319 9.48 23.03 Intron
6 SYN25051 A/G 0.308 161,275,547 12.7 27.12 GRMZM2G124103 Vacuolar ATPase G subunit 72.26 kb
7 SYN33611 A/G 0.386 164,889,910 9.28 19.52 GRMZM2G085939 Calmodulin-binding heat-shock protein 85.30 kb
8 PZE-102120786 A/C 0.329 164,893,346 10.9 23.1 81.87 kb
9 PZE-102120896 A/G 0.416 165,068,962 6.77 14.16 GRMZM2G386138 Cupin domain containing protein Intron
10 SYN33167 A/G 0.366 165,105,090 8.42 17.66 GRMZM2G047727 Ubiquitin fusion protein Intron
11 PZE-102120959 A/G 0.414 165,259,741 6.49 13.56 GRMZM2G085153 Nucleic acid binding protein 2.67 kb
12 PZE-102120961 A/C 0.426 165,259,881 7.43 15.54 2.53 kb
  1. a The letter under the line is the nucleotide minor frequency
  2. b Genes identified within 300 kb of SNPs detected by the distant of LD decay are indicated