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Table 1 Functional annotations of 14 SNP-bearing sequences significantly associated with phenotypic and environmental variables

From: Genetic variation associated with healthy traits and environmental conditions in Vaccinium vitis-idaea

SNP ID Associated Environmental Variable BLAST2GO Functional Annotation E-value % Identity
TP3574 MAR Pentatricopeptide repeat-containing mitochondrial 1.79042E-4 96
TP14763 TPC Transcription factor (contains a MYB DNA-binding domain) 3.94276E-5 93
TP15810 SWp, MAP, MAR Phospholipid:diacylglycerol acyltransferase 1-like 7.36315E-5 100
TP25921 TPC, SWp, SWS, MAR, MAT, MST Leaf rust 10 disease-resistance locus receptor-like protein kinase-like 1.57258E-5 86
TP26200 TPC, SWS Glucose-6-phosphate phosphate translocator chloroplastic-like 1.28322E-5 100
TP29832 MAP, AC RNA-binding CP31B chloroplastic 3.68209E-4 100
TP45867 SWp, SWS DEAD-box ATP-dependent RNA helicase 37-like 6.29099E-4 100
TP49117 MAT Calmodulin-binding transcription activator 4 isoform X3 1.35641E-6 95
TP60073 MAT Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like 6.21354E-4 100
TP69971 MAP, SWp, SWS NAD(P) FAD-dependent oxidoreductase 3.22832E-5 100
TP71702 MAR, SWS, TPC Unnamed protein product, partial 4.30509E-4 88.33
TP72119 AC Uncharacterized protein 3.3681E-5 100
TP72740 MAT, SWS Galacturonosyltransferase 3.34427E-6 100
TP75314 MST, SWp, SWS Hypothetical protein VITISV_032719 2.16821E-4 93
  1. Homologous sequences were retrieved by BLAST2GO using blastX with an E-value <0.001