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Fig. 1 | BMC Genomics

Fig. 1

From: Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression

Fig. 1

Nucleosome patterns across the transcription start site of rice genes. Regions 1000 bp upstream and downstream of the transcription start site (± 1000 bp TSS, or 5′ boundary of the element), were used to plot MNase-seq density under control conditions. (a) MNase-seq density for all rice genes across the transcription start site (TSS) under control conditions. PCG, protein-coding genes; TEG, transposable element related genes; TE, transposable elements; PSG, pseudo-genes, annotated genes that are neither expressed nor transposable elements. (b) MNase-seq density across the TSS of genes found to have −1 nucleosome at either −140 bp (7270 genes) or −250 bp (7170 genes) relative to the TSS

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