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Fig. 4 | BMC Genomics

Fig. 4

From: Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression

Fig. 4

Changes in nucleosome patterns in response to phosphate starvation. (a) MNase-seq density across the TSS from 24-h control and −Pi rice shoot tissues. (b) Three types of nucleosome dynamics identified by DANPOS: position shift (range: 50–95 bp), occupancy change (FDR < 0.05) and fuzziness change (FDR < 0.05). Each averaged MNase-seq density graph is centered at the dyad of nucleosome that is found to house the change. (c) Number of different types of dynamic nucleosomes per kilo base (kb) per 100 nucleosomes called by DANPOS at the promoter (500–1000 bp upstream of the TSS, 200–500 bp upstream of the TSS and 200 bp upstream of the TSS), intragenic (5’UTR, exons, introns and 3’UTR), 200 bp downstream of the TTS, and intergenic regions

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