Skip to main content
Fig. 5 | BMC Genomics

Fig. 5

From: Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression

Fig. 5

Changes in nucleosome patterns correlates with changes in transcription activities in response to phosphate starvation. (a) Percentage of 134 up-regulated genes (DEG_Up) called by iRNA-seq associated with dynamic nucleosomes called by DANPOS. Randomly selected (10,000 times) genes with the same size of DEGs were used as a control, and values are mean ± standard deviation. Pos_sft_5_3: 5′-3′ position shift; Pos_sft_3_5: 3′-5′ position shift; Occu_increase: increase in nucleosome occupancy; Occu_decrease: decrease in nucleosome occupancy; Fuz_increase: increase in nucleosome fuzziness; Fuz_decrease: decrease in nucleosome fuzziness. (b) Same analysis as (a) with 691 down-regulated genes (DEG_Dn). (c) AgriGO representation of the overrepresented Gene Ontology (GO) terms in the 130 genes up-regulated by 24 h of Pi starvation in the shoots via iRNA-seq associated with dynamic nucleosomes. Number in parenthesis represents the FDR value. (d) Same analysis as (c) with 678 down-regulated genes associated with dynamic nucleosomes

Back to article page
\